Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j20
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_5568| Best HMM Match : MBOAT (HMM E-Value=0.00049)                  30   2.0  
SB_12662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_41434| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   8.1  

>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 278  NSSDASSTMLCDCTARVWCEMEGGISRGQIGQTADDSGQCSQSTDQTHCQV 430
            N ++ +S  +C+C    W E  G + +G I    +  G C++ T    C +
Sbjct: 5377 NGTNTTSDKICECEQGYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDCLCDL 5427


>SB_5568| Best HMM Match : MBOAT (HMM E-Value=0.00049)
          Length = 282

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 492 VTLPVSTLVLPIYRLTHEPLETWQCVWSVLWL 397
           V L +S L+ P++R  H    TW  + +++WL
Sbjct: 61  VMLIMSLLIFPLFRFWHSSQSTWYHLPNIVWL 92


>SB_12662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 446 VKRYIGKTKVETGSV-TKSNVACC*HVRAAHR 538
           VK  + K KVETG++ +K +V  C H +++H+
Sbjct: 8   VKEVVHKAKVETGTMSSKRDVFMCRHRQSSHK 39


>SB_41434| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 381

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = -1

Query: 628 TSGLVNRCFPFFKLFSMTSGRVSINSVIGPAVCCSDMLTTCHIRFCDATSFNFSLANISF 449
           TS LV  C    +  S  S  V++   IGP    S ++T C IR    TS   +L  I  
Sbjct: 271 TSTLVTLCT--IRPSSHRSSLVTL-CTIGPPSHRSTLVTLCTIRSSSHTSTLVTLCTIRP 327

Query: 448 NS*ASRDLAMCLVSTL-ATLAAVIGS 374
           +S  S  + +C++ T  +TLA+   S
Sbjct: 328 SSHRSTLVTLCIMPTSDSTLASCSAS 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,038,342
Number of Sequences: 59808
Number of extensions: 358308
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)