Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j20
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF098992-11|AAC67462.2|  530|Caenorhabditis elegans Hypothetical...    28   5.4  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    28   7.1  
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    27   9.4  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    27   9.4  
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    27   9.4  

>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 178 IISNKFNNIYLSIS*VYGVSF*ISPMSSVFNTLLSIASFANLIIICILY 32
           I+ N    + L I   Y ++F  +P+SS+  T L   S  NLI  CI+Y
Sbjct: 216 IVINLHTWLELDIRPCYSINF-NAPISSIILTSLRQKSSYNLITKCIMY 263


>AF098992-11|AAC67462.2|  530|Caenorhabditis elegans Hypothetical
           protein F53C3.12 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 561 ETLPEVIENNLKKGKHRFTRPEVQTNLIGDLLYI 662
           ETLP +++ +L+ G H+  R E    + G+ +++
Sbjct: 436 ETLPGIVKADLENGDHKVWRRENDKQICGEPIFV 469


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -1

Query: 187 MKKIISNKFNNIYLSIS*VYGVSF*ISPMSSVFNTLLSIASFANLIIIC 41
           M  ++ N+F ++YLSI+  + + F   P+   FN LLSI     L I+C
Sbjct: 102 MNLLVYNEFQSVYLSINRFFAMLF---PLR--FNWLLSIKFTLLLHILC 145


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 MPLQQCCVTVLPEFGVKWREVFR 356
           + +Q+ C+ VL  FG KW +V R
Sbjct: 103 LSVQEKCLPVLESFGFKWPDVIR 125


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 MPLQQCCVTVLPEFGVKWREVFR 356
           + +Q+ C+ VL  FG KW +V R
Sbjct: 103 LSVQEKCLPVLESFGFKWPDVIR 125


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 MPLQQCCVTVLPEFGVKWREVFR 356
           + +Q+ C+ VL  FG KW +V R
Sbjct: 103 LSVQEKCLPVLESFGFKWPDVIR 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,559
Number of Sequences: 27780
Number of extensions: 273319
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)