Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j20
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    33   0.18 
At1g75430.1 68414.m08762 homeodomain-containing protein contains...    29   2.9  
At5g50210.1 68418.m06219 quinolinate synthetase A-related contai...    29   3.8  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   3.8  
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff...    28   5.0  
At4g21060.1 68417.m03045 galactosyltransferase family protein co...    28   6.6  
At1g51780.1 68414.m05835 IAA-amino acid hydrolase 5 / auxin conj...    27   8.8  
At1g49990.1 68414.m05610 expressed protein ; expression supporte...    27   8.8  

>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 513 VNMSEQHTAGPITELIETLPEVIENNLKKGKHRFTRPEVQTNLIG 647
           +N+   H  GPI + I+ L  + E NLK+ K     PE   N+ G
Sbjct: 316 LNLESNHLKGPIPDAIDRLHNLTELNLKRNKINGPIPETIGNISG 360


>At1g75430.1 68414.m08762 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 297

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +2

Query: 200 YLHLSITLMKVEQNEEFKQVKRPSNDNSSDASSTMLCDCTARVWCEMEGGISRGQIGQTA 379
           +LH S+ L+    NE  K V       S +  S    +   R+W  M   + R + G + 
Sbjct: 225 FLHPSVFLLLNYPNEAEKLVLASQTGLSKNQVSNWFINARVRLWKPMIEEMYREEFGDSL 284

Query: 380 DDSGQCSQSTD 412
           D+S Q   + D
Sbjct: 285 DESMQREANDD 295


>At5g50210.1 68418.m06219 quinolinate synthetase A-related contains
           weak similarity to Swiss-Prot:P11458 quinolinate
           synthetase A [Escherichia coli]
          Length = 718

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 266 PSNDNSSDASSTMLCDCTARVWCEMEGGISRGQIGQTADDSGQCSQ 403
           P    SS   S  +  CTARVW + E G   G++   AD     S+
Sbjct: 116 PQMPESSKTESNRVMGCTARVWLDAELG-QDGKMRFCADSDSDVSK 160


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1416

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 376 SLANLTARNTSLHFTPNSGSTVTQH 302
           SL  L A N++ HF+  SGST+  H
Sbjct: 11  SLGELLASNSNNHFSRRSGSTIDDH 35


>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1311

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 335 EMEGGISRGQIGQTADDSGQCSQSTDQTHCQVSRGS*VKRYIGKTKVETGSVTKSNVACC 514
           E  G    G  G+T   +G+   S + T   VSR    K+ I   ++++G  +   V  C
Sbjct: 306 ESNGESQSGSAGKTRRMNGEAGPSAEATSTSVSRQGSWKQPINSRQLKSGHSSNRQVPLC 365


>At4g21060.1 68417.m03045 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 741

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 483 PVSTLVLPIYRLTHEPLETWQCVWSVLWLHWP 388
           P  +L +    L H PL T +  W+V W  WP
Sbjct: 610 PEKSLYMGNLNLRHRPLRTGK--WTVTWEEWP 639


>At1g51780.1 68414.m05835 IAA-amino acid hydrolase 5 / auxin
           conjugate hydrolase (ILL5) identical to auxin conjugate
           hydrolase ILL5 [Arabidopsis thaliana]
           gi|5725649|gb|AAD48152; contains nonconsensus AT
           acceptor splice site at exon3
          Length = 435

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 284 SYCHLKVF*LV*ILHFVRLSLMLCSNEDISQL 189
           S+C L  F L  ILH +   L+ CS+ D+SQ+
Sbjct: 2   SFCKLVSFVL--ILHLLNSCLISCSSNDLSQI 31


>At1g49990.1 68414.m05610 expressed protein ; expression supported
           by MPSS
          Length = 371

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 525 RTC*QHATFDFVTLPVSTLVLPIYRLTHEPLETWQCVWSVL 403
           R C   +  D + + V   +L  +RL ++  E WQ +W V+
Sbjct: 233 RRCLTTSGEDVIFIEVIHRILKAWRLHNKESERWQLIWEVV 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,207
Number of Sequences: 28952
Number of extensions: 246798
Number of successful extensions: 646
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)