Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j18
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    41   2e-04
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    34   0.021
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.8  
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    27   2.4  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    26   4.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   7.5  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.9  
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    25   9.9  

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 284 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 463
           M I VK L G E  +DI P+  +S +K  V  K  IP  QQ+         DD   + Y 
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY- 59

Query: 464 NIKEGTKLNLVV 499
           +++ G+ L+LV+
Sbjct: 60  HLEGGSVLHLVL 71


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +2

Query: 221 VLKTPGSFVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISELKRHV 373
           +L+ PGS+V +  KT+    K K+ VK    G+ ++DI P + I E+K ++
Sbjct: 61  LLQEPGSYVGEVIKTM---GKNKVLVKVHPEGKYVVDISPDIDIKEIKPNI 108


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 643 VNFIPGHFIKLLLNNPQ 593
           V F PGHFI+ +L++PQ
Sbjct: 316 VPFAPGHFIEYILSHPQ 332


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 452 QMYPNIKEGTKLNLVVKKPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSW 631
           ++Y  + E  K + +     +LY+ S+KH     M      N  +  L IV  +F  MS 
Sbjct: 14  RIYKTLSEALKTDKI-----TLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSR 68

Query: 632 DEVDRLCYDCL 664
               RL Y  L
Sbjct: 69  VARHRLVYGLL 79


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 281 KMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVE 400
           K+K+ V+ +QG  CL       + S+  R + RK    +E
Sbjct: 83  KVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIE 122


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 503 KPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWD 634
           +PE   D S  H KR  +SD+ +  T+++ + ++    D++  D
Sbjct: 20  EPEQSADFSASHKKRGPVSDRSSRRTSSEEVDLMPNVDDEVDGD 63


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 33  FTKTWCCYRPLFFE 74
           FT TWCC   LF E
Sbjct: 123 FTTTWCCMFELFAE 136


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 281 KMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVE 400
           K+K+ V+ +QG  CL       + S+  R + RK    +E
Sbjct: 83  KVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIE 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,736
Number of Sequences: 5004
Number of extensions: 47362
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)