Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j18
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028 43 3e-04
06_03_0944 + 26202053-26202229,26203788-26204047,26204145-262042... 43 3e-04
01_06_0031 + 25760878-25761342 34 0.12
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 31 0.63
10_08_0470 - 18151326-18151769 30 1.5
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 30 1.9
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 29 2.5
03_02_0188 + 6251256-6251561 28 7.7
>09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028
Length = 153
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/70 (40%), Positives = 36/70 (51%)
Frame = +2
Query: 290 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNI 469
I VK L G E IDI P+ I +K V K IP QQ+ DD T + Y NI
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NI 137
Query: 470 KEGTKLNLVV 499
+ G+ L+LV+
Sbjct: 138 EGGSVLHLVL 147
>06_03_0944 +
26202053-26202229,26203788-26204047,26204145-26204245,
26204512-26204584,26205482-26205581
Length = 236
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/70 (40%), Positives = 36/70 (51%)
Frame = +2
Query: 290 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNI 469
I VK L G E IDI P+ I +K V K IP QQ+ DD T + Y NI
Sbjct: 107 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NI 165
Query: 470 KEGTKLNLVV 499
+ G+ L+LV+
Sbjct: 166 EGGSVLHLVL 175
>01_06_0031 + 25760878-25761342
Length = 154
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 284 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 463
+ + V+ L G E IDI + + +K V + IP QQ+ DD T Y
Sbjct: 77 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDY- 135
Query: 464 NIKEGTKLNLVV 499
I+ G+ L+LV+
Sbjct: 136 KIEAGSVLHLVL 147
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 278 SKMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQM 457
S ++I +K L + + + + LK +A I EQQ+ DD +
Sbjct: 101 STIEIKIKTLDSQTYNLRVNKRVPVPLLKEKIATVTGILSEQQRLICRGRVLKDDELLSA 160
Query: 458 YPNIKEGTKLNLVVKKP 508
Y ++++G L+LVV++P
Sbjct: 161 Y-HVEDGHTLHLVVRQP 176
>10_08_0470 - 18151326-18151769
Length = 147
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 287 KITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPN 466
+I VK L G + + PS + +K + K +P +QQ D HT+ +Y
Sbjct: 7 QIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHTL-IYYG 65
Query: 467 IKEGTKLNLV 496
I+E + L+L+
Sbjct: 66 IQEESTLHLL 75
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +2
Query: 284 MKITVKQLQGGECLIDIYPSMLISELKR--HVARKLHI-PVEQQKXXXXXXXXXDDHTIQ 454
MK+++K L+G ID+ P+ +S++K+ V + ++ P +QQ +D T++
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 455 MYPNIKEGTKLNLVVKKPES 514
++ + ++ KK S
Sbjct: 61 ENKVVENNFIVIMLSKKGSS 80
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 221 VLKTPGSFVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISEL 361
+L+ PGS+V + VK++ K K+ VK G+ ++DI S+ I+++
Sbjct: 82 LLQEPGSYVGE---VVKVMGKSKVLVKVHPEGKYVVDIDKSIDITKI 125
>03_02_0188 + 6251256-6251561
Length = 101
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 521 DASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWDEVDRLCYDCL 664
D S++H + KD AN + +R++ KF+ S + R+ YD L
Sbjct: 33 DVSYQHAGHAAV--KDNANETHFNIRVISPKFEGQSLVKRHRMVYDLL 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,689
Number of Sequences: 37544
Number of extensions: 262736
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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