Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j18
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)               34   0.12 
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)
          Length = 414

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 28/101 (27%), Positives = 51/101 (50%)
 Frame = +2

Query: 350 ISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLNLVVKKPESLYDAS 529
           I  +K  VA++L + VE+Q+         DD ++  Y  I +G+KL L +KK  S   +S
Sbjct: 126 ILAVKTLVAQELDVQVERQRLVYKGKTLADDCSLDEYL-IGDGSKLYLSIKKLSSQPGSS 184

Query: 530 FKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWDEVDRLC 652
            K+Y          +N  N+L ++++   ++   D+V + C
Sbjct: 185 QKNYA--------GSNFWNQLHKLLKSHLNEKDADKVLQRC 217


>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 239 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 123
           +L++LT +T+ D  Q+ +DLN    + N+++  +N++ C
Sbjct: 402 SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNINKC 440


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 239 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 123
           +L++LT +T+ D  Q+ +DLN    + N+++  +N++ C
Sbjct: 470 SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNINKC 508


>SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 239 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 123
           +L++LT +T+ D  Q+ +DLN    + N+++  +N+  C
Sbjct: 16  SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNIDKC 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,162,578
Number of Sequences: 59808
Number of extensions: 345775
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)