Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j18
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical pr...    38   0.009
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   2.3  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor prot...    28   5.2  
U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precurso...    28   5.2  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      27   9.1  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical
           protein F45H11.2 protein.
          Length = 77

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = +2

Query: 284 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 463
           M I VK L G E  +DI P+  +  +K  V  K  IP  QQ+         DD T   Y 
Sbjct: 1   MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADY- 59

Query: 464 NIKEGTKLNLVV 499
            +  G+ L+LV+
Sbjct: 60  KVLGGSVLHLVL 71


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 9   KINKLNSRFTKTWCCYRPLFF 71
           + N   S F  TWC YR L+F
Sbjct: 67  RCNDYGSHFLSTWCAYRALYF 87


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 485 LNLVVKKPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFD 619
           L ++VK  + + +   K Y+    S+ + ANT  K+ R+V+E FD
Sbjct: 340 LRMMVKLSDRMENPHLKEYRLPSFSETELANTRLKIGRVVKE-FD 383


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 566 DAANTANKLLRIVQEKFDKMSWDEVD 643
           + A+  N+ +RIVQ+KF++M+ D+ D
Sbjct: 58  EVASVKNQAMRIVQQKFEEMNRDKKD 83


>U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor protein
           10 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 291 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 124
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precursor
           protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 291 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 124
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 55  IDPYSLRLFSVIYFGLTSDIHRQHELKFIHPLN*FLNHK 171
           +D + +RLF +        IHR H L F   L+ FL  K
Sbjct: 354 MDNFEVRLFKIALCARIIGIHRLHTLSFYSYLHRFLQPK 392


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 55  IDPYSLRLFSVIYFGLTSDIHRQHELKFIHPLN*FLNHK 171
           +D + +RLF +        IHR H L F   L+ FL  K
Sbjct: 354 MDNFEVRLFKIALCARIIGIHRLHTLSFYSYLHRFLQPK 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,077
Number of Sequences: 27780
Number of extensions: 262191
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)