Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j17
         (452 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NP69 Cluster: LD30165p; n=8; Endopterygota|Rep: LD301...    75   7e-13
UniRef50_Q5K7L2 Cluster: ATP-dependent RNA helicase DBP9; n=1; F...    33   2.2  
UniRef50_Q04M25 Cluster: Membrane protein, putative; n=13; Strep...    33   3.8  
UniRef50_Q9LQA6 Cluster: F4N2.11; n=3; Arabidopsis thaliana|Rep:...    32   6.6  
UniRef50_Q7QV76 Cluster: GLP_438_21385_26946; n=1; Giardia lambl...    32   6.6  
UniRef50_Q8JKP7 Cluster: P51; n=1; Heliothis zea virus 1|Rep: P5...    31   8.7  

>UniRef50_Q6NP69 Cluster: LD30165p; n=8; Endopterygota|Rep: LD30165p -
            Drosophila melanogaster (Fruit fly)
          Length = 1045

 Score = 74.9 bits (176), Expect = 7e-13
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = +1

Query: 160  IHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDLTHLNHPIHPIRK 303
            ++KWY  FKV+YP LW+I+ S M+EI  F  NPPD++H+ HP HP RK
Sbjct: 992  VNKWYETFKVEYPQLWEIANSGMQEISAFEQNPPDMSHMEHPFHPTRK 1039


>UniRef50_Q5K7L2 Cluster: ATP-dependent RNA helicase DBP9; n=1;
           Filobasidiella neoformans|Rep: ATP-dependent RNA
           helicase DBP9 - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 627

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 241 HFAANPPDLTHLNH--PIHPIRK 303
           HFAANP DL++L H  P+HP R+
Sbjct: 543 HFAANPLDLSYLRHDAPLHPARQ 565


>UniRef50_Q04M25 Cluster: Membrane protein, putative; n=13;
           Streptococcus pneumoniae|Rep: Membrane protein, putative
           - Streptococcus pneumoniae serotype 2 (strain D39 / NCTC
           7466)
          Length = 629

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 369 KSCLELLCCVRKYEKYSNLIFDF--SDRVYRMVEVSQVWRVSGKMLDL 232
           K CL L    +K E  SNL  D+  SD +YR  +VS   R+  + L L
Sbjct: 360 KDCLNLAFSGKKEETLSNLFADYKVSDSLYRRAKVSDEKRIQARGLQL 407


>UniRef50_Q9LQA6 Cluster: F4N2.11; n=3; Arabidopsis thaliana|Rep:
           F4N2.11 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 688

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 205 WKISESAMKEIQHFAANPPDLTHLNHPIHPIRKIK 309
           +K  E  +K   +   +P ++TH +HP+HP++ +K
Sbjct: 123 YKCHECDLKFHVNCEKHPAEVTHFSHPLHPLKLVK 157


>UniRef50_Q7QV76 Cluster: GLP_438_21385_26946; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_438_21385_26946 - Giardia lamblia
           ATCC 50803
          Length = 1853

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +1

Query: 76  IAAVTFTFLFA*QRREMYKFRRHILCSKIHKWYNDFKVKYPDLWKISESAMKEIQHFAAN 255
           +A    +F F   R   ++F   +   +I   +N   ++YP+ W +S   +   Q     
Sbjct: 526 LAGKDISFEFLGGRFLAFRFAHKLTIFQIVLPFNKLTIEYPERWALSTHTISACQLVRET 585

Query: 256 PPDLTHLN 279
           PP   H+N
Sbjct: 586 PPVSAHIN 593


>UniRef50_Q8JKP7 Cluster: P51; n=1; Heliothis zea virus 1|Rep: P51 -
           Heliothis zea virus 1
          Length = 383

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 172 YNDFKVKYPDLWKI-SESAMKEIQHFAA 252
           YND K+KYP+L  I SE+ + +I+H  A
Sbjct: 258 YNDLKIKYPELKSINSENDLAKIKHLEA 285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,506,137
Number of Sequences: 1657284
Number of extensions: 9247183
Number of successful extensions: 21938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21926
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)