Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j17
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.083
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    28   0.58 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   3.1  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   4.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   5.4  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    24   9.5  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 31.1 bits (67), Expect = 0.083
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 366  SCLELLCCVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHG 223
            +CL  L  +  + KY+   F  +D   R + V    R+SG +L L HG
Sbjct: 2514 NCLASLDLLHIFIKYTTSSFFLTDDFVRFIRVCFHSRISGNLLTLLHG 2561


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 112 QRREMYKFRRHILCSKIHKWYNDFKVKYPDLWKISE 219
           +RR +Y   +   C+   KWY D   ++ D W I +
Sbjct: 436 ERRVIYLSLQEEYCTLKRKWYEDIHKQFNDRWFIEQ 471


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 154 SKIHKWYNDFKVKYPDLWKISESAMKEIQHFAAN 255
           S + ++YN + + Y + W  ++   K +Q   AN
Sbjct: 260 SLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKAN 293


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 132 FIHFSSLLGKQKCKSYRRYLTI**YIFMYLPSCIWKSQNL 13
           F  + S +GK+ CK + R+L    +       CIW   NL
Sbjct: 77  FESYHSKVGKKSCKRFMRWLKANAFAEERDIDCIWYQLNL 116


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 205 WKISESAMKEIQHFAANPPDLTHLNHP 285
           + I  S  K++ HF  + P  TH  HP
Sbjct: 879 YTIGTSNAKDVSHFVFSCPYYTHFCHP 905


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 240 TFCR*PSRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAPNK 365
           TFCR    LD P P+  P   N +L   +   S+  +  PNK
Sbjct: 218 TFCR---MLDEPLPANNPVQSNSRLVPLMKDFSNDIKHTPNK 256


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 YPKNQKLNWNIFHISSRNRGAPN 362
           YP N+ +N+N FH SS    A N
Sbjct: 39  YPLNKIVNYNHFHSSSCQSEAKN 61


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 357 PNKIFT*IHIIILFCNRYMMSNKINDKFLKKK 452
           P+ IF  + I   F N++   N   D+F KKK
Sbjct: 434 PDAIFLLLSIFDSFVNKFSELNDSLDQFFKKK 465


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 192 LHLKIIVPFVYLRT*NMTTKFIHFSSLLGKQKCKSYRRYLTI**YIFMYLPSCIWKS 22
           L L +I+P  + R  + T KF   +    +Q C  +    T     + +L   IWKS
Sbjct: 165 LFLLVIIPLFFPRAWSPTVKFSKVARPSPEQTCSIFSLIFT-----YGWLNGIIWKS 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,423
Number of Sequences: 5004
Number of extensions: 43691
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)