Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j17
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 32 0.25
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 29 1.3
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 29 1.7
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 28 3.1
01_06_1831 + 40198371-40198625,40199614-40200141 28 4.0
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 27 5.3
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 27 7.1
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 27 7.1
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 31.9 bits (69), Expect = 0.25
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 112 QRREMYKFRR---HILCSKIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDLTHLNH 282
Q +MY+ R L S +H W + V+Y DL KI + A+ ++++ + D ++ N+
Sbjct: 686 QMSDMYRKLRGTMRFLLSNLHDWKPENSVRYSDLPKIDKYALFQLENVVTSMKD-SYENY 744
Query: 283 PIHPIRKI 306
+ I +I
Sbjct: 745 QFYKIYQI 752
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 297 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 211
DR + V++ W G +LDL+ +F+N
Sbjct: 87 DRTVIITSVNEAWAAPGSLLDLYRDSFKN 115
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 345 CVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHGAFRNF 208
C+ + + YSN S++ + +V V +W + K ++FHG +F
Sbjct: 259 CIAEPDDYSN---SDSNKEWPLVTVKTIWEMREKHKNIFHGKIGDF 301
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 297 DRVYRMVEVSQVWRVSGKMLDLFHGAFR 214
DR M +++ W G +LDLF +FR
Sbjct: 113 DRTVIMTQINLAWTKPGSLLDLFFESFR 140
>01_06_1831 + 40198371-40198625,40199614-40200141
Length = 260
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 297 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 211
D+ + V+ W G +LDLF +F N
Sbjct: 102 DKTVIITSVNDAWAAPGSLLDLFRDSFHN 130
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 94 TFLFA*QRREMYKFRRHILCSKIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPD-LT 270
++L + QR HILC ++H ++ WK E +++Q FA + P+ L
Sbjct: 401 SYLISGQRVNPELIEYHILCCRVHSPTQWLRLLLYPKWKSKEK--EDLQGFAVDRPEPLV 458
Query: 271 H 273
H
Sbjct: 459 H 459
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 157 KIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDL 267
K K+Y+ K YPD+ IS + I A NP DL
Sbjct: 400 KYVKFYSAIKASYPDIKIISSCDISSIS--AVNPADL 434
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 258 SRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAP 359
+R + PQ Y P P+ LN F S+R+ P
Sbjct: 221 ARDEQPQIQYVPLPEPMPLNKESFRPSNRSESCP 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,730,070
Number of Sequences: 37544
Number of extensions: 235702
Number of successful extensions: 545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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