Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j17
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_14870| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24) 28 3.1
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 28 3.1
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) 28 3.1
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05) 28 3.1
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24) 27 5.5
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 27 5.5
SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4) 27 7.3
SB_47989| Best HMM Match : Filament (HMM E-Value=0.27) 27 7.3
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.6
SB_13946| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 101 CLPNKEEKCINFVVIFYVLRYTN 169
C+PN EEK I+F V R+TN
Sbjct: 717 CIPNNEEKYISFTKQVVVDRFTN 739
>SB_14870| Best HMM Match : Endonuclease_7 (HMM E-Value=0.24)
Length = 276
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 101 CLPNKEEKCINFVVIFYVLRYTN 169
C+PN EEK I+F V R+TN
Sbjct: 226 CIPNNEEKYISFTKQVVVDRFTN 248
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 101 CLPNKEEKCINFVVIFYVLRYTN 169
C+PN EEK I+F V R+TN
Sbjct: 665 CIPNNEEKYISFTKQVVVDRFTN 687
>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
Length = 856
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 101 CLPNKEEKCINFVVIFYVLRYTN 169
C+PN EEK I+F V R+TN
Sbjct: 735 CIPNNEEKYISFTKQVVVDRFTN 757
>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
Length = 708
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 101 CLPNKEEKCINFVVIFYVLRYTN 169
C+PN EEK I+F V R+TN
Sbjct: 673 CIPNNEEKYISFTKQVVVDRFTN 695
>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
Length = 1001
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 260 GGLAAKCWISFMALSEIFHKSGYFTLKSLYHLCIL 156
GGL AK WI++ LS+ F K L ++ +CI+
Sbjct: 511 GGLTAKLWIAYCVLSDRFVKKRKSML--VWMICIV 543
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 255 PSRLDSPQPSYTPYPKNQKLNWNIFHISS 341
PS+L+SP+P TP PKN H+ S
Sbjct: 914 PSQLESPEPCVTP-PKNTLKQVGTCHLES 941
>SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)
Length = 369
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 186 GEVSRFMENFGKRHERDPTFCR*PSRLDSPQPSYTPYPKNQKLNWNI 326
G+V + +GK +ER P + R+ + + Y P K+NW +
Sbjct: 112 GKVYGRVPTYGKVYERVPARGKVYGRVPTQEKVYERVPARGKVNWRV 158
>SB_47989| Best HMM Match : Filament (HMM E-Value=0.27)
Length = 366
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 115 RREMYKFRRHILCSKIHKWYNDFKVKYPDLWKISESAMKEIQ 240
R+E +F+ SKI K ++ K KY +LW++ K Q
Sbjct: 267 RQEKLEFKVDSYLSKIEKMISEEKDKYFNLWEVRLKETKSEQ 308
>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 16 ILTFPNTRR*IHKYVLSYC 72
ILTFPNT K++ SYC
Sbjct: 217 ILTFPNTLTPPEKFIYSYC 235
>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 943
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 154 SKIHKWYNDFKVKYPD---LW-KISESAMKEIQHFAANPPDLTHLNHPIH-PIR 300
SK H W +KV Y D W SE+A +++ FA N + + H ++ PIR
Sbjct: 434 SKSHSWVTSYKVMYSDDAAKWFHYSEAASEKV--FAGNFDKSSVVKHQLNEPIR 485
>SB_13946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 255 PSRLDSPQPSYTPYPK 302
PSR P P+YTPY K
Sbjct: 65 PSRPSPPPPTYTPYEK 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,291
Number of Sequences: 59808
Number of extensions: 287798
Number of successful extensions: 600
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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