Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j17
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69150.1 68414.m07911 DC1 domain-containing protein contains ...    32   0.21 
At4g30200.3 68417.m04295 expressed protein contains weak similar...    29   1.5  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    29   1.5  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    29   1.5  
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    29   1.9  
At2g16650.1 68415.m01911 expressed protein                             27   4.5  
At3g04510.1 68416.m00478 hypothetical protein contains Pfam prof...    27   7.8  
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ...    27   7.8  

>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 205 WKISESAMKEIQHFAANPPDLTHLNHPIHPIRKIK 309
           +K  E  +K   +   +P ++TH +HP+HP++ +K
Sbjct: 123 YKCHECDLKFHVNCEKHPAEVTHFSHPLHPLKLVK 157


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 PDLWKISESAMKEIQHFAANPPDLTHLNHP 285
           PD+ K+  SA++ ++  A  PPD+  L  P
Sbjct: 312 PDVQKLCSSALESLETIATTPPDVAALPSP 341


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 PDLWKISESAMKEIQHFAANPPDLTHLNHP 285
           PD+ K+  SA++ ++  A  PPD+  L  P
Sbjct: 312 PDVQKLCSSALESLETIATTPPDVAALPSP 341


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 PDLWKISESAMKEIQHFAANPPDLTHLNHP 285
           PD+ K+  SA++ ++  A  PPD+  L  P
Sbjct: 295 PDVQKLCSSALESLETIATTPPDVAALPSP 324


>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 247 AANPPDLTHLNHPIHPIR 300
           A NP ++ H +HP+HP++
Sbjct: 171 AKNPSEVNHSHHPLHPLK 188


>At2g16650.1 68415.m01911 expressed protein
          Length = 511

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 195 SRFMENFGKRHERDPTFCR*PSRLDSPQPSYTPYPKNQKLNWNIFHISSRN 347
           S F + + +RH+   TF +   +L+ P P      +++K +W+ F +S  N
Sbjct: 435 STFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGSWH-FPVSCEN 484


>At3g04510.1 68416.m00478 hypothetical protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 201

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 207 ENFGKRHERDPTFCR*PSRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAP 359
           +N   R+       + PS   SP PS + Y   ++ +WN F    RN   P
Sbjct: 6   QNHNNRNPNTSLSTQTPSSFSSP-PSSSRYENQKRRDWNTFCQYLRNHHPP 55


>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 884

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 360 LELLCCVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHGAFR 214
           L+ LCC     +   L +D+  RV+ M+ + +  +  G   ++ H A R
Sbjct: 96  LQRLCCCGVGSRNLRLSYDYGRRVFLMLNIVEDLKSKGIFEEVAHPATR 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,403
Number of Sequences: 28952
Number of extensions: 210862
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)