Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j16
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.58 
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   5.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   5.4  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   7.1  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.4  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 605 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 697
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 187 VNKPIFNSYISAQFN*LYTNAY*SLLQRVLVYKQIALNI 71
           V +P       AQF+   TN   SLL  + +Y+Q+A N+
Sbjct: 12  VQRPSAGPVNQAQFSQQRTNQLTSLLHTMTMYQQLAQNV 50


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 155 TNIRIKNGFVYVLHKIHKVIDRHKSEVSLCCVV 253
           T I   +GF Y+L  +H+++D+ +S+ S C +V
Sbjct: 707 TEISGSSGFQYILFILHQLLDK-ESDDSACFLV 738


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 146 ELCTNIRIKNGFVYV-LHKIHKVIDRHKSEVSLCCVV 253
           ++CT + +   F +  +HK+ K++DR    +  C ++
Sbjct: 16  DVCTCLLVDKVFYWSQIHKVRKLVDRSIERMESCSII 52


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 384 TLWTAFKTTEAHEVVYEMKLFQA 452
           +L T   TTE HE  Y  KL +A
Sbjct: 383 SLTTGLSTTEGHETGYSRKLHEA 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,818
Number of Sequences: 5004
Number of extensions: 66431
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)