Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j16
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4) 32 0.61
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 3.3
SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9) 29 4.3
SB_51613| Best HMM Match : DUF1662 (HMM E-Value=4.4) 29 5.7
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22) 28 7.5
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9) 28 7.5
SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08) 28 7.5
SB_57685| Best HMM Match : Pkinase_Tyr (HMM E-Value=7.9) 28 10.0
SB_19325| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4)
Length = 300
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 225 KVKFPYAALSYINVTLCTYTAMLVGYMATFNEFEYLQYW-----FLLSFLMSVALNAPTL 389
+V +PY+ L ++++L T L A EY +YW F + +SV L A
Sbjct: 204 RVLYPYSGLCKLDLSLAEVTRRLPSIKAVLQVPEYSEYWRTAECFAIRKGISVVLQASKE 263
Query: 390 WT 395
WT
Sbjct: 264 WT 265
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 614 LSICQIMLYGYIVCFSYEFYYCY 682
L C Y Y C+ Y +YYCY
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCY 489
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 623 CQIMLYGYIVCFSYEFYYCY 682
C Y Y C+ Y +YYCY
Sbjct: 474 CYCYYYCYCYCYYYCYYYCY 493
>SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)
Length = 310
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 645 ILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWS 779
++F +V+ MG C L + S F + L + IAT W+
Sbjct: 55 VVFATVLMTFSAMGFNCFGQSLFEFSSSFTALGTLLQLAIATTWT 99
>SB_51613| Best HMM Match : DUF1662 (HMM E-Value=4.4)
Length = 246
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 225 KVKFPYAALSYINVTLCTYTAMLVGYMATFNEFEYLQYW 341
+V +PY+ L ++++L T L A EY +YW
Sbjct: 204 RVLYPYSGLCKLDLSLAEVTRRLPSIKAVLQVPEYSEYW 242
>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 415 ASVVLNA-VHKVGAFSATDIKNDNRNQYCKYSNSLNVAMYPTN 290
A +V+N +HK G S I+ D KY +VA+YPTN
Sbjct: 306 APIVINRELHKGGDRSCMHIELDITGSGIKYDAGDHVAVYPTN 348
>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
Length = 269
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +3
Query: 300 YMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEV 425
Y F L LS ++SVA N LWT F T H V
Sbjct: 9 YQENLESFILLSVLSTLSGIVSVAGNFLVLWTIFHTKSLHVV 50
>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
Length = 930
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 313 STNLNIYNTGFCCR 354
S NLN Y+TG CCR
Sbjct: 373 SLNLNCYSTGICCR 386
>SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)
Length = 210
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 339 WFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNY 482
W + F+ + N+P LW T EVV + +L A N ++ +
Sbjct: 127 WLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVNDIIEW 174
>SB_57685| Best HMM Match : Pkinase_Tyr (HMM E-Value=7.9)
Length = 104
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 524 KNKICTHLIVRKHHIIQQHVTKVHGLEQLHFVNYFMGFCGFER 396
+ +IC H +++ H+I+ + +V +Q F+ Y G F+R
Sbjct: 60 RKEICIHRMLQDVHVIKFYAQRVENSKQYLFLEYSSGGELFDR 102
>SB_19325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 524 KNKICTHLIVRKHHIIQQHVTKVHGLEQLHFVNYFMGFCGFER 396
+ +IC H +++ H+I+ + +V +Q F+ Y G F+R
Sbjct: 60 RKEICIHRMLQDVHVIKFYAQRVENSKQYLFLEYSSGGELFDR 102
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 213 STDTKVKFPYAALSYINVTLCTYTAML 293
STD +V F + +L N+T TY A+L
Sbjct: 2250 STDARVDFKFNSLRPSNITTSTYAALL 2276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,814,059
Number of Sequences: 59808
Number of extensions: 496550
Number of successful extensions: 1260
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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