Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j16
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   2.5  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.5  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   7.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.9  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 120 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 28
           +V C    F  +   ++CA NC+ +G+ G  C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHC 74


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 120 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 28
           +V C    F  +   ++CA NC+ +G+ G  C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHC 74


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 639 YNMIWHIDNP 610
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 639 YNMIWHIDNP 610
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 120 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 28
           +V C    F  +   ++CA NC  +G+ G  C
Sbjct: 18  RVTCDLLSFKGQVNDSACAANCHSLGKAGGHC 49


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 675 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSL 782
           IV+G   + T +  +S + NS     YI  + +W L
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFL 299


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 327 YLQYWFLLSFLMSVALN 377
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 327 YLQYWFLLSFLMSVALN 377
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 327 YLQYWFLLSFLMSVALN 377
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,259
Number of Sequences: 438
Number of extensions: 4869
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)