Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j13
         (426 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...   203   2e-54
AY341235-1|AAR13799.1|  196|Anopheles gambiae transferrin-like p...    26   0.64 
AY341234-1|AAR13798.1|  196|Anopheles gambiae transferrin-like p...    26   0.64 
AY341233-1|AAR13797.1|  196|Anopheles gambiae transferrin-like p...    26   0.64 
AY341232-1|AAR13796.1|  196|Anopheles gambiae transferrin-like p...    26   0.64 
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    25   0.85 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   6.0  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.0  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             22   7.9  

>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score =  203 bits (496), Expect = 2e-54
 Identities = 93/111 (83%), Positives = 101/111 (90%)
 Frame = +2

Query: 53  KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 232
           +RRNGGR KH RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+DASVY  + 
Sbjct: 3   ERRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYV 62

Query: 233 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 385
           LPKLYAKLHYCVSCAIHSKVVRNRSK+ RRIRTPP+ +FP+DM+R Q  QR
Sbjct: 63  LPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPKDMNRQQNAQR 113


>AY341235-1|AAR13799.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 77  KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 208
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY341234-1|AAR13798.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 77  KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 208
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY341233-1|AAR13797.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 77  KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 208
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY341232-1|AAR13796.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 77  KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 208
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 25.4 bits (53), Expect = 0.85
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 11  RSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCV 133
           R L  G  VR      R+    + G  + KAV CTN  +C+
Sbjct: 238 RCLERGHMVRECQGTNRSSLCIRCGAANHKAVNCTNDVKCL 278


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 283 QQSCQEQIEERQKNPYSSQ 339
           QQ  Q+Q ++RQ+ P S Q
Sbjct: 254 QQLSQQQQQQRQRQPSSQQ 272


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +2

Query: 119  CARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVR 298
            CA  V K + + ++ IR  + +    DI  ASV+   +         Y +   +   +  
Sbjct: 808  CATTVRKGRKLYQYTIRLPINSPWKEDILIASVFNECRPDAETVAYLYHIRMELICPIPE 867

Query: 299  NRSKKDRRIRTPPKS 343
             ++ + R+I  P +S
Sbjct: 868  EQNTRGRKIYAPEES 882


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 315 TEESVLLPRVTSLGTCHVHRQ 377
           T+ S+  PR+T   T HV+ +
Sbjct: 176 TDGSIFPPRITKNSTLHVYEK 196


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,072
Number of Sequences: 2352
Number of extensions: 8032
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 34867302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)