Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j13
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNC 121
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNC 121
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNC 121
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 235 P*VIR*APLLRVMRHPQQSCQEQIEERQK 321
           P V++   LL  + HP +  Q ++  R+K
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 235 P*VIR*APLLRVMRHPQQSCQEQIEERQK 321
           P V++   LL  + HP +  Q ++  R+K
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,509
Number of Sequences: 438
Number of extensions: 2168
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)