Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j13
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   161   1e-40
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           158   1e-39
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           158   1e-39
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    29   1.7  
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    28   2.3  
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    28   3.0  
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P...    27   4.0  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   5.3  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  161 bits (392), Expect = 1e-40
 Identities = 72/113 (63%), Positives = 86/113 (76%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 224 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 382
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  158 bits (384), Expect = 1e-39
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 224 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 382
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  158 bits (384), Expect = 1e-39
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = +2

Query: 44  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 224 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 382
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 130 APRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRTAE 5
           +P+ + A+++ N  TSM  A S     SHV++L + E RT++
Sbjct: 485 SPQDILATNAANFGTSMPAAQSSQFQGSHVTSLGNCEGRTSD 526


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 254 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAV 379
           L YC S  + S+V R  +     + TPP  +FP+  S   A+
Sbjct: 32  LSYCSSLPMASRVTRKLNVSSA-LHTPPALHFPKQSSNSPAI 72


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 254 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 385
           L    S A+ + V  N+SKK      PP   FPR +S P   +R
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRR 68


>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 599

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 130 APRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRTA 8
           A ++VC   + N +T ++   + +++TSH S L S E+ T+
Sbjct: 356 ALKSVCLPTTLNESTILINGDNSSSMTSH-SELSSNEEMTS 395


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 101 AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 244
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,341,897
Number of Sequences: 28952
Number of extensions: 149589
Number of successful extensions: 387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)