Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j12
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.14 
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   1.8  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   3.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   3.1  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        27   4.1  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   5.4  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                26   7.1  
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)                      26   7.1  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           26   7.1  
SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)                      26   9.4  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   9.4  
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)                 26   9.4  
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)                      26   9.4  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 26   9.4  
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_39407| Best HMM Match : TIG (HMM E-Value=0)                         26   9.4  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       26   9.4  
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)                      26   9.4  

>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 15  LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 164
           +ST  S  + K+  R   T+  GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 1   MSTHYSSPYKKLVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 15  LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 164
           +ST  S  + K+  R   T+   IT    T Y +S +K+V +   T+ +  TC
Sbjct: 28  MSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSLTTRWSGITC 80


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 35  EVYQNGQTYQKGWNYWQIWHTLRCL 109
           + YQ     + GW  WQIW  LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 102 GASLRKMVKKMEVTQHAKYTCSFCGK 179
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/76 (18%), Positives = 31/76 (40%)
 Frame = -1

Query: 334 VYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 155
           + + + F   N   A +   + V     +    +L+         +++  AS  + E  +
Sbjct: 122 ILHHSIFWGNNFWFAAVTPPSDVTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEF 181

Query: 154 FACWVTSIFLTILRRE 107
           + CWV S F+T  + +
Sbjct: 182 YECWVASFFITTAKTQ 197


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 181 SLPQNEQVYFACWVTSIFLTIL 116
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 164 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 304
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 159 TCSFCGKDAMKRS 197
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 289 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 122
           D H    V EN +    T    RL D +   +  +  +  +  VYF       FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 298 LTADLHDEAAVVENTQAP 245
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 298  LTADLHDEAAVVENTQAP 245
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 35  EVYQNGQTYQKGWNYWQIWHTLRCL 109
           +VY+N    + G   WQIW  LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667


>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
          Length = 438

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 252 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 139
           +++ LQS    YK  C  KNV  HP      Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3   FFFSLSTFVS-ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQ 146
           F F L +F S  ++ +MAK T+  G+     TR+ + ++  +      Q
Sbjct: 614 FTFPLHSFPSLNKYWRMAKETEPFGVDSTIHTRFNSLIQDRISSQGTRQ 662


>SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 320

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 3   FFFSLSTFVSERFTKMAKRTKKVGITGKYGTRYG 104
           F F  + F S  F     + K VG  G YGT +G
Sbjct: 79  FIFQFTNFYSSIFYIAFFKGKFVGYPGNYGTIFG 112


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 114 RKMVKKMEVTQHAKYTCSFCGKDAMKRS 197
           R+ VK + + +  KY C  C KD  + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437


>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
          Length = 1423

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 289  DLHDEAAVVENTQAPPATVLLHRLQDQMPTQ 197
            ++H+  +   +  +PPA+V+ H+L++   TQ
Sbjct: 1386 EIHEVMSQCFDENSPPASVIRHKLEELYSTQ 1416


>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
          Length = 889

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 286 LHDEAAVV--ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 155
           LHD AA V   + + P  T+ LH     +PT  R +   P+    Y
Sbjct: 409 LHDAAASVYTASNEPPEFTIELHHELGYLPTYPRKVTIRPRKVPTY 454


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 165  SFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRL 305
            S C KDA  ++ VG ++C RCK    G  +       S+CR   +RL
Sbjct: 911  SACHKDAACQNTVGSYAC-RCKEGYEGDGY-------SNCRVEKKRL 949


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 322 NYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPT 200
           N FTSR +LTA+    A    N    P    L+     MPT
Sbjct: 88  NDFTSRKMLTAEEMINAVFESNLNNRPENQRLYFRSSSMPT 128


>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
          Length = 1710

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 27   VSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 179
            +S  +TK+  RT+K  I GKY       +++      V     YT S   K
Sbjct: 1245 MSSSYTKIICRTQKSHIPGKYNVSVSVGVQQCACTSHVGCSFAYTTSLTPK 1295


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 168 FCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 284
           +C        C+  W+ KRC +    G + F+ T   +C
Sbjct: 594 YCDHVTGSCECLPGWTGKRCDQACPSGTYGFNCTLPCAC 632


>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 982

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 3   FFFSLSTFVSERFTKMAKRTKKVGITGKYGTRYG 104
           F F  + F S  F     + K VG  G YGT +G
Sbjct: 17  FIFQFTNFYSSIFYIAFFKGKFVGYPGNYGTIFG 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,249
Number of Sequences: 59808
Number of extensions: 234409
Number of successful extensions: 646
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)