Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j11
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.76 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.76 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   1.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   1.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   1.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   1.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 421 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 257
           ++V ++   L+  + F  +V  I  P ++   ++  +  FA I   +  CV VVV
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 421 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 257
           ++V ++   L+  + F  +V  I  P ++   ++  +  FA I   +  CV VVV
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 317 QFQDLCKNLLHCRILRSCRCARICT*NCAC 228
           +++  C  L HC    +C C   C   C C
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKC 767



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 593 KFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 712
           K++  H  F   +GN ++  + ++  LDA  N +     L
Sbjct: 574 KWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPL 613


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 227 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 316
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 227 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 316
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 227 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 316
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 227 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 316
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = +2

Query: 527 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 706
           DD+   +E   + + +     E  +       ND      +F++ LN+ D  +++  S  
Sbjct: 36  DDIDSLLEDESERMLRKRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIR 95

Query: 707 KLKTAIVTESKN 742
           K+    V  +KN
Sbjct: 96  KIIRQCVDNAKN 107


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 356 QVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHL 508
           Q YH+  + F KQK  ++   L       +  L  LM   F NKS  ++ +
Sbjct: 9   QHYHITPV-FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEI 58


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 421 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 257
           ++V ++   LL    F  ++  I  P ++   ++  F  F  I      CV VVV
Sbjct: 270 EKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVV 324


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 536 RDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 670
           RD+I   +     +NT  E+  +T +   + +GN  E   L  N+
Sbjct: 314 RDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQ 358


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 146 FDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTN 271
           FD  D   Y+ N  Q  H  K D+   N H+ +  +     N
Sbjct: 417 FDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 412 EIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 257
           +I F   L +      VNLI   ++I Y+ V  F   A     +  C+ +++
Sbjct: 224 DIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPADSGEKIALCINILL 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,109
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)