Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j11
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 32 0.47
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 31 0.82
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 30 1.4
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 30 1.9
At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to ... 29 4.4
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 4.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 29 4.4
At1g49560.1 68414.m05557 myb family transcription factor contain... 29 4.4
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ... 29 4.4
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 4.4
At2g22610.1 68415.m02680 kinesin motor protein-related 28 5.8
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 7.7
At2g45140.1 68415.m05618 vesicle-associated membrane protein, pu... 28 7.7
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 31.9 bits (69), Expect = 0.47
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +2
Query: 344 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGL---LKILMRLNFDNKSNALLHLQT 514
W+ LN + ++ + D G +FA GL L +L + FD NA T
Sbjct: 236 WEEKDGEFLNTLTNYRSDKRPD-PLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPT 294
Query: 515 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKND 628
E D DKIE K KK VT + K D
Sbjct: 295 EEPLDGEGDKIE---KKGKKRGRGKSSESVTRKKLKTD 329
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +2
Query: 530 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 709
DL ++ E + KH ++ + +HE F R E+ R + + + +K
Sbjct: 426 DLTERDEHIKKHEVEIGELESRISKSHELFNTKKRERDEEQRKRKEKWGEESQLSSEIDK 485
Query: 710 LKTAIVTESKN 742
LKT + KN
Sbjct: 486 LKTELERAKKN 496
>At5g03990.1 68418.m00379 expressed protein predicted protein,
Arabidopsis thaliana
Length = 302
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +2
Query: 158 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 262
D+ + N W H WD CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
strong similarity to gi:4467359
Length = 1116
Score = 29.9 bits (64), Expect = 1.9
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Frame = +2
Query: 380 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE--RDDLRDKIES 553
+FH+ K++ D S K G LK L + FD K N +T+ D+ +
Sbjct: 360 LFHESKNEDDKVSNAVDDEEKDGFLKKLFKEKFDEKRNGNERNETDETVYTDETSGEDNG 419
Query: 554 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTE 733
KKL EKF K D GN E E L +L + E +KT + +E
Sbjct: 420 REGFFKKL--FKEKFEDKPNIGKADDGNESEDDESSEFSLFRRL-FRRHPEDVKTTLPSE 476
Query: 734 S-KNG 745
+ NG
Sbjct: 477 NCSNG 481
>At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 263
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 428 LFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 592
+ AT G+L++++ + NK + +R+D DK ++ L+ V ++ NS+
Sbjct: 197 MVATPLGILQLILYFKYKNKKDLAPTTMVITKRNDHDDKNKATLEFVVDVDRNSD 251
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = +2
Query: 476 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFE 655
F K N L + G + L +K E + ++K+ K V + FK + QF+
Sbjct: 244 FPTKENMELLMSYTGGKWTL-EKWEQYFQELRKVLRVESKLRVFY--FKIQFSTKITQFK 300
Query: 656 LRLNELDAKLNMLQSAEKLK 715
RLN +++ + S++KLK
Sbjct: 301 KRLNVVNSACEEVCSSQKLK 320
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 593 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCF 486
FR Y + +H +QI + R+N L+F+G+ + C+
Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCY 175
>At1g49560.1 68414.m05557 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 333
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 503 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 595
H+Q EG D+++ ++ H++K N+N+EK
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257
>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 787
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 HNDTNAKFYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQKSKRDLNSLGALF 433
H FY +++ + L + +L CN W+ VYH N++ +++ R LNS LF
Sbjct: 62 HQTQLGVFYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQISRFLNSQILLF 118
Query: 434 ATKQGLLKILMRLNFDNKSNALLHLQTE 517
+ +R+N D + L TE
Sbjct: 119 VLAE---VCHLRVNGDRIERNMDRLLTE 143
>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
cellulose synthase catalytic subunit [gi:13925881] from
Nicotiana alata, cellulose synthase-4 [gi:9622880] from
Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 439 GREQCAQRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVV 260
G ++ A + + FL+V + MVN+IA+ + + + F ++K+ V F V+
Sbjct: 1068 GDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVL 1127
Query: 259 VHV 251
H+
Sbjct: 1128 CHL 1130
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +2
Query: 530 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 709
+L +++ KH++++ T E V + T N+V F++ +++ N+L+++ +
Sbjct: 939 ELEMRLKEQEKHIQEMATTREFPEVANAT-PNEVKTCFKEDNFGNENMESNTNILRTSNR 997
Query: 710 LKT 718
LKT
Sbjct: 998 LKT 1000
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 545 IESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAI 724
+ ++K++K NS + ++T + D+G++ + LN+ + K + + L AI
Sbjct: 398 LRKLMKYIKD-RYNSPEIIITENGYGEDLGDKDTDLSVALNDHNRKYYLQRHLLALNEAI 456
Query: 725 VTESKNGT 748
+ N T
Sbjct: 457 CEDKVNVT 464
>At2g45140.1 68415.m05618 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 239
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 482 NKSNALLHLQTEGERD-DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 658
+ S L+ +Q + E DL+ K + +L+ V + K VTHE F + G+R E+ +L
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKD-VTHEMFSKEAGHRVEETKL 120
Query: 659 RL 664
R+
Sbjct: 121 RV 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,450
Number of Sequences: 28952
Number of extensions: 259830
Number of successful extensions: 830
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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