Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j10
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   31   0.19 
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       27   5.4  
SB_33937| Best HMM Match : DUF164 (HMM E-Value=0.11)                   27   5.4  
SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        27   5.4  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   26   9.4  

>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 11  NPTALWCTRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           N T +  T+K   L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 26  NSTLVHHTKKPLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 78



 Score = 30.7 bits (66), Expect = 0.33
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +2

Query: 32  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           T+K + L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 384 TKKLQSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKL 429



 Score = 29.5 bits (63), Expect = 0.77
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +2

Query: 32  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           T+K   L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 412 TKKLLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 457



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 32  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           T+K   L+K    +T  LL LTK P+S   K ++ T+K  + TKK+
Sbjct: 236 TKKLLSLTKKLLSLTKKLLSLTKKPLSLTKKPLSLTKKLQSLTKKL 281



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 50  LSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 320 LTKKLQSLTKKLLSLTKKPLSLTKKPLSLTKKLLSLTKKL 359



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 32  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           T+K + L+K    +T   L LTK P+S   K ++ T+K  + TKK+
Sbjct: 321 TKKLQSLTKKLLSLTKKPLSLTKKPLSLTKKLLSLTKKLQSLTKKL 366


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 13  SNCTLVYTKNEAAQQVLLENNFTAINAD 96
           SN  +  T+NE   QV LEN F  +  D
Sbjct: 317 SNVPVSVTENEVPGQVTLENEFVRVRLD 344


>SB_33937| Best HMM Match : DUF164 (HMM E-Value=0.11)
          Length = 296

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +2

Query: 32  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 160
           T+K + L+K    +T  LL LTK  +S   K ++ T+K ++ TKK+
Sbjct: 6   TKKLQSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKL 51



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 32  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKVYLYI 172
           T+K   L+K    +T  LL LTK  +S   K ++ T+K ++ TKK+  ++
Sbjct: 237 TKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSHL 286


>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 25  LVYTKNEAAQQVLLENNFTAINADQTAYLKNYKSYREMN**NKKSLF-IYYLLTYK 189
           L YT+    Q   L++ F +   D  +   +Y+S R  +      L+ +YY LT+K
Sbjct: 374 LTYTRITPVQCCFLQDVFASSCVDNPSRSSHYRSVRNSHCLQTTCLYLVYYWLTHK 429


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  WCTRKTRQLSKFYWKITLPLLMLTKPPISK 115
           +CT+ +RQ+ +  W+++ PL   T  P S+
Sbjct: 8   FCTQGSRQVRQHPWRLSSPLQDSTAHPTSR 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,307,294
Number of Sequences: 59808
Number of extensions: 129222
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)