Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j10
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    28   1.6  
U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical pr...    26   6.3  
AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical ...    26   8.3  

>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 151 KKSLFIYYLLTYKIWYTSVQIVSVQRH 231
           +K++FI  +LT+ +W  +  I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233


>U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical
           protein ZC449.4 protein.
          Length = 76

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 22  TLVYTKNEAAQQVLLENNFTAIN 90
           ++VY K E AQ+ L  NNF  IN
Sbjct: 52  SMVYIKKEKAQERLPINNFAPIN 74


>AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical
           protein B0019.1 protein.
          Length = 724

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 5   CANPTALWCTRKTRQLS-KFYWKITLPLLMLTKPPISKTINHT 130
           C N T    TRK RQLS +  W  TL   ++  P     + +T
Sbjct: 131 CGNNTVFQQTRKKRQLSLQQQWSTTLFTDLINSPETLGNLTNT 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,529,144
Number of Sequences: 27780
Number of extensions: 106310
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)