Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j10
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07510.1 68417.m01165 hypothetical protein                          26   7.7  
At2g23920.1 68415.m02856 hypothetical protein                          26   7.7  

>At4g07510.1 68417.m01165 hypothetical protein 
          Length = 312

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   ANPTALWCTRKTRQLSKFYWKITLPLLML 94
           + P  LW  + TR   KF WK  L LL+L
Sbjct: 195 SQPHTLWTRKFTRTREKFNWK-DLSLLVL 222


>At2g23920.1 68415.m02856 hypothetical protein 
          Length = 56

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 191 ILYVNK*YINRLFLF 147
           + Y+N+ YINRLF+F
Sbjct: 34  MFYINQFYINRLFIF 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,721
Number of Sequences: 28952
Number of extensions: 88588
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)