Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j06
(251 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36241 Cluster: 60S ribosomal protein L19; n=141; Eukar... 63 1e-09
UniRef50_Q95L19 Cluster: Ribosomal protein L19; n=4; Eukaryota|R... 55 3e-07
UniRef50_P84098 Cluster: 60S ribosomal protein L19; n=53; Eukary... 55 3e-07
UniRef50_Q014R4 Cluster: Ribosomal protein L19; n=2; Eukaryota|R... 54 5e-07
UniRef50_Q5DEB4 Cluster: Ribosomal protein L19; n=6; Eukaryota|R... 52 3e-06
UniRef50_Q6X9Y8 Cluster: Ribosomal protein L19; n=1; Equus cabal... 49 2e-05
UniRef50_UPI0000DA4672 Cluster: PREDICTED: similar to ribosomal ... 43 0.001
UniRef50_Q6QI82 Cluster: LRRGT00126; n=3; Rattus norvegicus|Rep:... 43 0.001
UniRef50_Q7QT86 Cluster: GLP_72_19704_20255; n=1; Giardia lambli... 42 0.002
UniRef50_Q4QJ39 Cluster: 60S ribosomal protein L19, putative; n=... 41 0.005
UniRef50_Q98RT9 Cluster: 60S ribosomal protein L19; n=1; Guillar... 40 0.014
UniRef50_UPI0001552F33 Cluster: PREDICTED: hypothetical protein;... 36 0.23
UniRef50_Q8TM93 Cluster: O-methyltransferase; n=3; Methanomicrob... 36 0.23
UniRef50_A3QGM1 Cluster: Tetratricopeptide TPR_2 repeat protein ... 33 1.6
UniRef50_A7HD11 Cluster: Polysulphide reductase NrfD; n=2; Anaer... 32 2.1
UniRef50_Q3UTW2 Cluster: Adult male aorta and vein cDNA, RIKEN f... 31 3.7
UniRef50_Q7QT85 Cluster: Ribosomal protein L19; n=1; Giardia lam... 31 3.7
UniRef50_Q0VPP8 Cluster: ABC transporter, permease protein, puta... 31 6.4
UniRef50_UPI00015559B3 Cluster: PREDICTED: similar to zinc finge... 30 8.5
UniRef50_Q8VRI8 Cluster: Putative uncharacterized protein; n=1; ... 30 8.5
UniRef50_Q10QC8 Cluster: Salt-inducible protein, putative, expre... 30 8.5
UniRef50_Q6NE28 Cluster: Putative methylase; n=1; Leptospira pha... 30 8.5
UniRef50_A5E683 Cluster: Putative uncharacterized protein; n=1; ... 30 8.5
UniRef50_A5DYV8 Cluster: Putative uncharacterized protein; n=1; ... 30 8.5
UniRef50_Q9ZCT3 Cluster: UPF0118 membrane protein RP630; n=10; R... 30 8.5
>UniRef50_P36241 Cluster: 60S ribosomal protein L19; n=141;
Eukaryota|Rep: 60S ribosomal protein L19 - Drosophila
melanogaster (Fruit fly)
Length = 203
Score = 63.3 bits (147), Expect = 1e-09
Identities = 34/71 (47%), Positives = 39/71 (54%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLLQT 180
KGNVFKNKRVLMEYIH+KKAEK R+KML+DQ L+
Sbjct: 128 KGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARKRREERIATKKQELIAL 187
Query: 181 FAREDEAALTA 213
A+EDE A A
Sbjct: 188 HAKEDEIAAKA 198
>UniRef50_Q95L19 Cluster: Ribosomal protein L19; n=4; Eukaryota|Rep:
Ribosomal protein L19 - Sus scrofa (Pig)
Length = 153
Score = 54.8 bits (126), Expect = 3e-07
Identities = 23/31 (74%), Positives = 29/31 (93%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ
Sbjct: 120 KGNVFKNKRILMEHIHKLKADKARKKLLADQ 150
>UniRef50_P84098 Cluster: 60S ribosomal protein L19; n=53;
Eukaryota|Rep: 60S ribosomal protein L19 - Homo sapiens
(Human)
Length = 196
Score = 54.8 bits (126), Expect = 3e-07
Identities = 23/31 (74%), Positives = 29/31 (93%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ
Sbjct: 128 KGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>UniRef50_Q014R4 Cluster: Ribosomal protein L19; n=2; Eukaryota|Rep:
Ribosomal protein L19 - Ostreococcus tauri
Length = 213
Score = 54.4 bits (125), Expect = 5e-07
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 148 KGNVFKNKRVLMEAIHKSKAEKAREKSLADQ 178
>UniRef50_Q5DEB4 Cluster: Ribosomal protein L19; n=6; Eukaryota|Rep:
Ribosomal protein L19 - Schistosoma japonicum (Blood
fluke)
Length = 287
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGN FKNKRVL+++IH+KKAE+ R K LSDQ
Sbjct: 128 KGNQFKNKRVLIDHIHKKKAERLRAKQLSDQ 158
>UniRef50_Q6X9Y8 Cluster: Ribosomal protein L19; n=1; Equus
caballus|Rep: Ribosomal protein L19 - Equus caballus
(Horse)
Length = 81
Score = 48.8 bits (111), Expect = 2e-05
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = +2
Query: 2 RVMCSRTSVCSWSTSTGXXXXXXXXXXXXXXXXPAAIK*RRHASAARNVLPPRRRNCCRP 181
R MCS+T SW+TST PA ++ R+HASAA++ PR+R R
Sbjct: 5 RAMCSKTRGFSWNTSTSRRQTRLARSFWRTRLRPAGLRPRKHASAAKSGSRPRKRKSSRL 64
Query: 182 SLEKTKPR 205
S + +PR
Sbjct: 65 SPRRKRPR 72
>UniRef50_UPI0000DA4672 Cluster: PREDICTED: similar to ribosomal
protein L19; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L19 - Rattus norvegicus
Length = 303
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
K NVFKN+ +LME IH+ KA+KA K+L+DQ
Sbjct: 125 KRNVFKNQWILMEQIHKPKADKACKKLLADQ 155
>UniRef50_Q6QI82 Cluster: LRRGT00126; n=3; Rattus norvegicus|Rep:
LRRGT00126 - Rattus norvegicus (Rat)
Length = 632
Score = 42.7 bits (96), Expect = 0.001
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNK L+++IH+ KA++A K+L+DQ
Sbjct: 583 KGNVFKNKWSLVDHIHKLKADRAPKKLLADQ 613
>UniRef50_Q7QT86 Cluster: GLP_72_19704_20255; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_72_19704_20255 - Giardia lamblia
ATCC 50803
Length = 183
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = -3
Query: 159 LGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITL 1
+GGN + LA LL +AA L L+ L LL L DVL E+ L+LEH+TL
Sbjct: 51 VGGNLLCSLLASLLCLLAALLKLLLLLLLELLLLLHSNDVLQENALILEHVTL 103
>UniRef50_Q4QJ39 Cluster: 60S ribosomal protein L19, putative; n=16;
cellular organisms|Rep: 60S ribosomal protein L19,
putative - Leishmania major
Length = 267
Score = 41.1 bits (92), Expect = 0.005
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVF+NKR L+E+IH+ K EK + + L++Q
Sbjct: 148 KGNVFRNKRNLVEHIHKIKNEKKKERQLAEQ 178
>UniRef50_Q98RT9 Cluster: 60S ribosomal protein L19; n=1; Guillardia
theta|Rep: 60S ribosomal protein L19 - Guillardia theta
(Cryptomonas phi)
Length = 190
Score = 39.5 bits (88), Expect = 0.014
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNK++L E+IH+ K E+ R + D+
Sbjct: 128 KGNVFKNKKILTEFIHKAKNEQKRKEEFLDK 158
>UniRef50_UPI0001552F33 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 183
Score = 35.5 bits (78), Expect = 0.23
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +1
Query: 1 KGNVFK--NKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNV K +KR+ E+I + KA+ A+ K+LSDQ
Sbjct: 121 KGNVLKTIDKRIFKEHIRKLKADSAQQKLLSDQ 153
>UniRef50_Q8TM93 Cluster: O-methyltransferase; n=3;
Methanomicrobia|Rep: O-methyltransferase -
Methanosarcina acetivorans
Length = 349
Score = 35.5 bits (78), Expect = 0.23
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -3
Query: 246 YLLVTT*CLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLY-FIAAGLSLVAKHLRP 70
YL V T C L+ K GF +S+G +Q+L+ G T+ L L Y +A +A+ +R
Sbjct: 65 YLNVLTACGLVIKKNGFYQNSQGAEQYLVTGSPTYYGDLILLEYERMAMSPKEIAERVRN 124
Query: 69 G 67
G
Sbjct: 125 G 125
>UniRef50_A3QGM1 Cluster: Tetratricopeptide TPR_2 repeat protein
precursor; n=1; Shewanella loihica PV-4|Rep:
Tetratricopeptide TPR_2 repeat protein precursor -
Shewanella loihica (strain BAA-1088 / PV-4)
Length = 718
Score = 32.7 bits (71), Expect = 1.6
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = -3
Query: 165 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHI 7
L LG +T+L A A L+ ++ GL+ A +RPGL+ LL ++ ++ H + E I
Sbjct: 553 LNLGNDTYLEATARLMDTLSRGLAGEAYLIRPGLI-LLTLNEVNAHQALQERI 604
>UniRef50_A7HD11 Cluster: Polysulphide reductase NrfD; n=2;
Anaeromyxobacter|Rep: Polysulphide reductase NrfD -
Anaeromyxobacter sp. Fw109-5
Length = 417
Score = 32.3 bits (70), Expect = 2.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 201 GFVFSSEGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLS 58
G V +G + +L GG + A +A LL +A G + A +R GL++
Sbjct: 3 GVVEFVKGCARLVLTGGRAYKAWMAALLALVAIGATAYAHQMRAGLIA 50
>UniRef50_Q3UTW2 Cluster: Adult male aorta and vein cDNA, RIKEN
full-length enriched library, clone:A530084C06
product:hypothetical Arginine-rich region profile
containing protein, full insert sequence; n=1; Mus
musculus|Rep: Adult male aorta and vein cDNA, RIKEN
full-length enriched library, clone:A530084C06
product:hypothetical Arginine-rich region profile
containing protein, full insert sequence - Mus musculus
(Mouse)
Length = 186
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 122 RHA-SAARNVLPPRRRNCCRPSLEKTKPRLPLRSKH 226
RH+ S+ R LP RR C P PRL LRS+H
Sbjct: 47 RHSNSSRRRHLPDPRRRCPPPGCWLHSPRLSLRSRH 82
>UniRef50_Q7QT85 Cluster: Ribosomal protein L19; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein L19 - Giardia
lamblia ATCC 50803
Length = 196
Score = 31.5 bits (68), Expect = 3.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGN+FKNKRVL+E+I + E+ K ++
Sbjct: 128 KGNMFKNKRVLLEHIVGMQKEQELEKKKKEE 158
>UniRef50_Q0VPP8 Cluster: ABC transporter, permease protein,
putative; n=1; Alcanivorax borkumensis SK2|Rep: ABC
transporter, permease protein, putative - Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
Length = 801
Score = 30.7 bits (66), Expect = 6.4
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -3
Query: 222 LLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLP 49
+++ G+R + + LQ F L GG LA L L I G+ L L LLP
Sbjct: 718 VVIGGRRALLRKTAALQAFYLFGGAALLANLIHLAALIPLGMRLFDSQLPLSPWLLLP 775
>UniRef50_UPI00015559B3 Cluster: PREDICTED: similar to zinc finger,
CCHC domain containing 11; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to zinc finger, CCHC
domain containing 11 - Ornithorhynchus anatinus
Length = 1555
Score = 30.3 bits (65), Expect = 8.5
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -3
Query: 225 CLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPV 46
CL S K GF F L + L G+ L C I + ++ KH PGL ++LP+
Sbjct: 959 CLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNC-KDIIESLAKILRKH--PGLRNILPI 1015
Query: 45 DVLHEHTLVLEH 10
+ EH
Sbjct: 1016 TTAKVPIVKFEH 1027
>UniRef50_Q8VRI8 Cluster: Putative uncharacterized protein; n=1;
Serratia marcescens|Rep: Putative uncharacterized
protein - Serratia marcescens
Length = 178
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 177 LQQFLLLGGNTFLAALACLLYFIAAGLSLVA 85
L LLGG +LA L LY+I AGL L+A
Sbjct: 20 LSGLYLLGGGIWLAKLGGSLYYIIAGLVLLA 50
>UniRef50_Q10QC8 Cluster: Salt-inducible protein, putative,
expressed; n=3; Oryza sativa|Rep: Salt-inducible
protein, putative, expressed - Oryza sativa subsp.
japonica (Rice)
Length = 796
Score = 30.3 bits (65), Expect = 8.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 165 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 7
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>UniRef50_Q6NE28 Cluster: Putative methylase; n=1; Leptospira phage
LE1|Rep: Putative methylase - Leptospira phage LE1
Length = 1971
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 216 LSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPG--LLSLLPVD 43
++GK + ++ +++ + L GNT +A +C+ + + +H RPG L +++ VD
Sbjct: 1638 INGKCKIIIGTDVIKEGVDLNGNTAVAYNSCIDWNPTTEVQKRGRHHRPGNLLSNVMWVD 1697
Query: 42 VLHEHTL 22
VL E ++
Sbjct: 1698 VLMEDSI 1704
>UniRef50_A5E683 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 2219
Score = 30.3 bits (65), Expect = 8.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 201 GFVFSSEGLQQFLLLGGN 148
GF+FS+E L Q L LGGN
Sbjct: 907 GFIFSNESLNQILYLGGN 924
>UniRef50_A5DYV8 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 993
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 141 LAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHI 7
LA L CLL A S H++P L L +DV + ++EH+
Sbjct: 720 LAVLDCLLSLAAVSNSNSNTHVKPNLSDELIIDVKNARHPIIEHL 764
>UniRef50_Q9ZCT3 Cluster: UPF0118 membrane protein RP630; n=10;
Rickettsia|Rep: UPF0118 membrane protein RP630 -
Rickettsia prowazekii
Length = 351
Score = 30.3 bits (65), Expect = 8.5
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 225 CLLLSGKRGFVFSSEGLQQFLLLGGNT-FLAALACLLYFIAAGLSLVAKHLRPGLLSLL 52
CLLLS F+ G+ LLLG T FL + L FI+ L+L+ +L G+ S L
Sbjct: 212 CLLLSTYYSIAFTLIGIDLALLLGILTGFLVIIPLLGTFISFLLTLIIGYLTFGITSKL 270
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,345,693
Number of Sequences: 1657284
Number of extensions: 2789359
Number of successful extensions: 10246
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10240
length of database: 575,637,011
effective HSP length: 62
effective length of database: 472,885,403
effective search space used: 9930593463
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -