Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j06
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    43   7e-06
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    43   7e-06
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   0.50 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   2.0  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   2.0  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   2.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   3.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    23   6.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   6.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    23   6.2  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    23   6.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    23   8.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   8.2  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    23   8.2  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 42.7 bits (96), Expect = 7e-06
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 1   KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
           KGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 128 KGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 42.7 bits (96), Expect = 7e-06
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 1   KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
           KGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 128 KGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -3

Query: 168 FLLLGGNT-----FLAALACLLYFIAAGL 97
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 138 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 49
           A L CLL  IAA   L+  H+ P L  LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 222 LLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLY 115
           +L +GK  ++    GL + LL GG +F   + CL +
Sbjct: 70  ILNNGKAYWLAMLVGLLECLLSGGKSFAKVINCLRF 105


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 201 GFVFSSEGLQQFLLLGGNTFLAA 133
           G VFS + L +F+  GGN F+ A
Sbjct: 83  GPVFSPKSLLEFVQSGGNLFVVA 105


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 131 SAARNVLPPRRRNCCRPSLEKTKPRL 208
           +A  N+   R  NC R  LE + PRL
Sbjct: 552 TAVSNIEVARFENCVRKFLENSVPRL 577


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 114 FIAAGLSLVAKHLRPGLLSLL 52
           F+ +G   ++K+L PG++SLL
Sbjct: 176 FLESGFLRLSKNLVPGVISLL 196


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 108 AAGLSLVAKHLRPGLLSLLPVDVLHE 31
           AAG S + + LRPG ++ +P D L+E
Sbjct: 390 AAGRSWILEALRPGAIT-IPDDGLNE 414


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 119  RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 214
            RR+  A    +P       RPSLEKT    P+
Sbjct: 960  RRNQDAPEKHVPVIEIQSSRPSLEKTDQSTPV 991


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 101 PAAIK*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKHYVVTN 241
           P  ++ R   S   N+LP RR       L+  KP+ P  + + VV N
Sbjct: 46  PIWVQRRLKRSDLDNLLPNRRMKDINDDLKNAKPQWPF-TGYSVVEN 91


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 59  AFFLWMYSMSTRLFL 15
           AF LW+YS+   L+L
Sbjct: 337 AFVLWVYSLDKELWL 351


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 128  ASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 223
            +S A+N L   +R+  +  L K +PR P  S+
Sbjct: 1453 SSPAKNELFVPKRSSVKSDLAKVRPRYPKGSE 1484


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 156 GGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVD 43
           G N    +  CLLY    G   +   + PG+ S   VD
Sbjct: 21  GQNAIEKSHVCLLYANTVGCEALKNLILPGIGSFAVVD 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,808
Number of Sequences: 5004
Number of extensions: 10090
Number of successful extensions: 41
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)