Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j06
(251 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 54 1e-08
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 54 1e-08
03_02_0050 + 5272471-5274861 30 0.22
07_03_1639 + 28305801-28305958,28306240-28306249 29 0.52
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 1.6
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 27 2.8
01_03_0120 + 12717221-12717665,12718539-12718724,12719482-127195... 27 2.8
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 26 4.8
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 26 4.8
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 26 4.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 26 4.8
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 165 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 7
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGN+ NKR + +AEKAR + LSDQ
Sbjct: 4 KGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 139 RGACVPPLLYCGGP 98
+GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 128 ASAARNVLPPRRRNCCRPSLEKTKPRL 208
A+AA +PPRRR RP L + P L
Sbjct: 451 AAAAAAGMPPRRRRRVRPPLPPSPPLL 477
>01_03_0120 +
12717221-12717665,12718539-12718724,12719482-12719585,
12720096-12720620
Length = 419
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 237 VTT*CLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLY 115
+T+ + G G S LQ +++LGG T + LACL Y
Sbjct: 1 MTSGLVTAGGGGGGKVMSLRLQYYVVLGGVTAVVLLACLRY 41
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 74 VLAFSAFFLWMYSMSTRLFLN 12
VL + AFF W +S ++FLN
Sbjct: 15 VLGWVAFFAWSFSFYPQVFLN 35
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 201 GFVFSSEGLQQFLLLGGNTFLAAL-ACLLY 115
GFVFS +G++ LLL L CLLY
Sbjct: 390 GFVFSQQGIRDILLLSYYDLPINLKTCLLY 419
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 119 RRHASAARNVLPPRRRNCCRPSLEKTKPR 205
RRH A + +PP+ R R SL K K R
Sbjct: 439 RRHNVIACSGVPPKVRKAMRISLNKVKQR 467
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 166 PPSWRQYVPRGACVPPLLYCGGPQPG 89
PP +P GA PP +Y PQPG
Sbjct: 117 PPGVPHVMPPGAVRPPAMY--APQPG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,634,616
Number of Sequences: 37544
Number of extensions: 88956
Number of successful extensions: 273
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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