Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j06
         (251 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)               67   2e-12
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   1.1  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   1.1  
SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_51144| Best HMM Match : Sugar_tr (HMM E-Value=0.13)                 26   5.6  
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      26   5.6  
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        25   7.4  
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        25   7.4  
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)                     25   7.4  
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)                     25   7.4  
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)                   25   7.4  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        25   7.4  
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)                  25   7.4  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)                   25   7.4  
SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)                 25   9.8  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/68 (50%), Positives = 41/68 (60%)
 Frame = +1

Query: 1   KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLLQT 180
           KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ                         +L  
Sbjct: 156 KGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDMLSA 215

Query: 181 FAREDEAA 204
           +A+E+EAA
Sbjct: 216 YAKEEEAA 223


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 168 FLLLGGNTFLAALAC 124
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 PPRRRNCCRPSLEKTKPRLPLRSK 223
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -3

Query: 165 LLLGGNTFLAALACLLYFIAAGLS 94
           +LLG  TFL+A+ CLL  +AA +S
Sbjct: 526 VLLGPRTFLSAI-CLLLALAASIS 548


>SB_51144| Best HMM Match : Sugar_tr (HMM E-Value=0.13)
          Length = 371

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 168 FLLLGGNTFLAALAC 124
           F L+ G TFLAALAC
Sbjct: 317 FALMSGLTFLAALAC 331


>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 158 RRRNCCRPSLEKTKPRLPLRSKHYVVT 238
           R++    P L ++ PRL L S+HY +T
Sbjct: 2   RKQQKTAPKLVQSIPRLTLYSRHYNIT 28


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 1   KGNVFKNKRVLMEYIHRKK 57
           K NV KNKR+ ++ + RKK
Sbjct: 62  KANVKKNKRIALQALKRKK 80


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 1   KGNVFKNKRVLMEYIHRKK 57
           K NV KNKR+ ++ + RKK
Sbjct: 62  KANVKKNKRIALQALKRKK 80


>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 68  AFSAFFLWMYSMSTRLFLNTLP 3
           +F AFF W+YS+  RL    +P
Sbjct: 414 SFKAFFQWLYSIILRLSDEPVP 435


>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 68  AFSAFFLWMYSMSTRLFLNTLP 3
           +F AFF W+YS+  RL    +P
Sbjct: 414 SFKAFFQWLYSIILRLSDEPVP 435


>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
          Length = 566

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 SAARNVLPPRRRNCCRPSLEK 193
           S AR V P  R   CRP+L K
Sbjct: 539 STARQVPPTTRSTSCRPALRK 559


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 119 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKH 226
           RRHAS++    PP+++   R    +++ R P +S+H
Sbjct: 98  RRHASSSPEDSPPKKK---RKRRVESEERSPFKSRH 130


>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
          Length = 212

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 137 ARNVLPPRRRNCCRPSLEKTKPRLPLRSKHYVVTNK 244
           A++  P R  N C  +L  TKPR P       V NK
Sbjct: 127 AQSSKPLRVCNSCYNTLSNTKPRAPGEKPEAPVPNK 162


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 131  SAARNVLPPRRRNCCRPSLEK 193
            S AR V P  R   CRP+L K
Sbjct: 1669 STARQVPPTTRSTSCRPALRK 1689


>SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)
          Length = 203

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 SAARNVLPPRRRNCCRPSLEK 193
           S AR V P  R   CRP+L K
Sbjct: 176 STARQVPPTTRSTSCRPALRK 196


>SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)
          Length = 507

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 219 LLSGKRGFVFSSEGLQQ-FLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLP 49
           ++S    F+ +S G ++ FL +GG + +A +   ++FI   L      L P    ++P
Sbjct: 104 MMSPLLDFLLTSFGWRKTFLAMGGISLIAGIIPAVFFIPNVLQKTENALHPSETEVVP 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,029,341
Number of Sequences: 59808
Number of extensions: 80445
Number of successful extensions: 283
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 304358471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)