Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j06
(251 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 43 2e-05
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 31 0.11
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 30 0.25
AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical ... 28 0.76
Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical ... 26 3.1
AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein. 26 3.1
Z92829-1|CAB07339.1| 161|Caenorhabditis elegans Hypothetical pr... 26 4.1
AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical ... 26 4.1
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 25 5.4
U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 25 9.4
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 25 9.4
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGN FKNK+ L+EYI +KK E R K L+DQ
Sbjct: 128 KGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 119 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 223
RRHAS +PP NC +P+ ++T+ + L ++
Sbjct: 14 RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 29.9 bits (64), Expect = 0.25
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 166 PPSWRQYVPRGACVPPL 116
P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237
>AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical
protein C44B12.6 protein.
Length = 162
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 140 RNVLPPRRRNCCRPSLEKTKPRLP 211
R++L P+ R+C PS++K+ LP
Sbjct: 51 RHMLTPKSRDCSEPSIDKSSEVLP 74
>Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 177 LQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLH 34
L+ L +GG AA+ L YFI + LS+ L GL + L LH
Sbjct: 785 LRMSLTMGGWGGSAAITILFYFIFSILSVCILILMEGLSAFLHAIRLH 832
>AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 177 LQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLH 34
L+ L +GG AA+ L YFI + LS+ L GL + L LH
Sbjct: 785 LRMSLTMGGWGGSAAITILFYFIFSILSVCILILMEGLSAFLHAIRLH 832
>AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein.
Length = 865
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 177 LQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLH 34
L+ L +GG AA+ L YFI + LS+ L GL + L LH
Sbjct: 785 LRMSLTMGGWGGSAAITILFYFIFSILSVCILILMEGLSAFLHAIRLH 832
>Z92829-1|CAB07339.1| 161|Caenorhabditis elegans Hypothetical
protein F10A3.1 protein.
Length = 161
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 159 LGGNTFLAALACLLYFIAAGLSL 91
LG + +++ A + YFIAAGL+L
Sbjct: 129 LGYSAWVSVAAAVCYFIAAGLAL 151
>AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical
protein Y68A4A.2 protein.
Length = 309
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 95 AWSLSIFVLAFSAFFLWMYSMSTRLF 18
A+ + IFVLA FFL+ + S ++F
Sbjct: 119 AFHVLIFVLAVERFFLYFFPSSEKVF 144
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 95 AWSLSIFVLAFSAFFLWMYSMSTRLF 18
A+ + IFVLA FF++ + S ++F
Sbjct: 118 AFHVLIFVLAVERFFIYFFPSSEKIF 143
>U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein
10, isoform b protein.
Length = 492
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 92 WSLSIFVLAFSAFFLWM 42
W L++ V F +FF W+
Sbjct: 290 WYLALLVFTFGSFFYWL 306
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -1
Query: 92 WSLSIFVLAFSAFFLWM 42
W L++ V F +FF W+
Sbjct: 290 WYLALLVFTFGSFFYWL 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,421,321
Number of Sequences: 27780
Number of extensions: 63513
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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