Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j06
         (251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.048
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.048
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   2.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   3.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   4.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   5.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   5.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   7.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   9.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.048
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 LPPRRRNCCRPSLEKTKPRLPLRSKHYVVTNK 244
           + PR++NCCR  L K     P RSK   V ++
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSKRIDVISR 420


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.048
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 LPPRRRNCCRPSLEKTKPRLPLRSKHYVVTNK 244
           + PR++NCCR  L K     P RSK   V ++
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSKRIDVISR 420


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 141 LAALACLLYFIAAGLSLVAKHLRPGL 64
           L  L+C+L+F+   + +   ++R GL
Sbjct: 205 LYQLSCILFFLIPMVFIAVLYIRIGL 230


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 89 SLSIFVLAFSAFFLWMYSMSTRL 21
          +LSI      A F+W+Y++S  L
Sbjct: 9  ALSIRHAVILASFVWIYALSLSL 31


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 1   KGNVFKNKRVLMEYIHRKKAEK 66
           +GN F   R L ++   KKA K
Sbjct: 314 RGNNFSLSRKLAKFAKEKKAAK 335


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 165 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLS-LLPVDV-LHEHTL 22
           LL GG  +L  + CL     A  S +   +    ++ ++P+ + +H+  L
Sbjct: 374 LLKGGGGYLLGIQCLTVVCLAFWSFIVSTILLWFINKIIPIRMSIHDELL 423


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 146 VLPPRRRNCC 175
           V PPRR+N C
Sbjct: 338 VEPPRRKNNC 347


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 143 NVLPPRRRNCCRPSLEKTKPRLPL 214
           N L   RR   R  LEK K  +PL
Sbjct: 54  NELEKNRRAHLRNCLEKLKVLVPL 77


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 167 NCCRPSLEKTKPRLP 211
           N C+   +K K RLP
Sbjct: 394 NACKKKDDKPKRRLP 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,337
Number of Sequences: 438
Number of extensions: 979
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)