Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j06
(251 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 56 4e-09
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 56 4e-09
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 54 1e-08
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 30 0.24
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 0.56
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 27 1.3
At3g43740.2 68416.m04673 leucine-rich repeat family protein cont... 26 3.0
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 26 4.0
At3g19180.1 68416.m02435 cell division protein-related weak simi... 25 5.3
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 25 7.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 25 7.0
At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease fami... 25 9.2
At5g08480.2 68418.m01002 VQ motif-containing protein contains PF... 25 9.2
At5g08480.1 68418.m01001 VQ motif-containing protein contains PF... 25 9.2
At3g62610.1 68416.m07033 myb family transcription factor similar... 25 9.2
At1g23830.1 68414.m03006 expressed protein 25 9.2
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 55.6 bits (128), Expect = 4e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 55.6 bits (128), Expect = 4e-09
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 54.0 bits (124), Expect = 1e-08
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 93
KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 1 KGNVFKNKRVLMEYIHRKKAEK 66
KG V+KNK VLME +H+ E+
Sbjct: 45 KGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 0.56
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 92 WSLSIFVLAFSAFFLWMYSMSTRL 21
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 111 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTL 22
IA L KHL+P L+SL+P V H EH L
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPL 1004
>At3g43740.2 68416.m04673 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to somatic
embryogenesis receptor-like kinase 2 [Arabidopsis
thaliana] gi|14573457|gb|AAK68073
Length = 248
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 69 GLLSLLPVDVLHEHTLVLEHIT 4
G+++LLP D L TL + HIT
Sbjct: 101 GIITLLPFDYLKTFTLSVTHIT 122
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 75 RPGLLSLLPVDVLHEHTLVLEH 10
RP LL L LHEH L L H
Sbjct: 139 RPALLVLAENSYLHEHPLQLSH 160
>At3g19180.1 68416.m02435 cell division protein-related weak
similarity to cell division protein Ftn2 [Synechococcus
sp. PCC 7942] GI:16226084
Length = 819
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 183 EGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDV 40
E L Q L+G + +A L C ++F SL +R G L +P+ V
Sbjct: 568 EWLSQSSLIGRVSVVALLGCTVFF-----SLKLSGIRSGRLQSMPISV 610
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 119 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKHY 229
RR S R+ PPRRR+ R + + R R K Y
Sbjct: 122 RRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 119 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKHY 229
RR S R+ PPRRR+ R + + R R K Y
Sbjct: 122 RRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease family
protein contains Pfam profile PF00860: Permease family
Length = 530
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 198 FVFSSEGLQQFLLLGGNTFLAALACLLYFIAA 103
FV SS GL++ GG T L A+ LYF+A+
Sbjct: 396 FVESSAGLKE----GGKTGLTAVIVGLYFLAS 423
>At5g08480.2 68418.m01002 VQ motif-containing protein contains
PF05678: VQ motif
Length = 173
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 161 RRNCCRPSLEKTKPRLPLR 217
RR C RP LE KP L +
Sbjct: 67 RRQCMRPKLEIVKPPLSFK 85
>At5g08480.1 68418.m01001 VQ motif-containing protein contains
PF05678: VQ motif
Length = 142
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 161 RRNCCRPSLEKTKPRLPLR 217
RR C RP LE KP L +
Sbjct: 67 RRQCMRPKLEIVKPPLSFK 85
>At3g62610.1 68416.m07033 myb family transcription factor similar to
myb-like transcription factor GI:168590 from [Zea mays]
Length = 343
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 128 ASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKHYVVTNK*K 250
A+ N PP +R R S KP+ L K++ N K
Sbjct: 126 ANTVENAPPPPKRRPGRTSRSAMKPKFILNPKNHKTPNSFK 166
>At1g23830.1 68414.m03006 expressed protein
Length = 345
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 92 WSLSIFVLAFSAFFLWMYSMST 27
WS S+F+ F FFL S ST
Sbjct: 157 WSTSVFLFFFLFFFLQFLSGST 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,189,157
Number of Sequences: 28952
Number of extensions: 61140
Number of successful extensions: 224
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 62
effective length of database: 10,275,536
effective search space used: 215786256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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