Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    35   2.3  
UniRef50_Q96KR1 Cluster: Zinc finger RNA-binding protein; n=56; ...    35   2.3  
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    34   4.0  
UniRef50_Q9F583 Cluster: Riorf172 protein; n=1; Agrobacterium rh...    34   4.0  
UniRef50_A6RDA0 Cluster: Predicted protein; n=5; Ajellomyces cap...    34   4.0  
UniRef50_Q5NXW9 Cluster: Putative uncharacterized protein; n=4; ...    33   9.2  
UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   9.2  
UniRef50_A7F8S9 Cluster: Predicted protein; n=1; Sclerotinia scl...    33   9.2  

>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 522 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCQETSCGVGVLL 358
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 391 VTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 446


>UniRef50_Q96KR1 Cluster: Zinc finger RNA-binding protein; n=56;
           Eumetazoa|Rep: Zinc finger RNA-binding protein - Homo
           sapiens (Human)
          Length = 1057

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 432 REIVRLMTTL--PVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTASCKS 605
           +++V+L T L  P+PS    +    T   A     P A+ S   AN CT      A+   
Sbjct: 385 QKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAANNCTVNTSSVATSSM 444

Query: 606 AGVCSSAGQQMDSVTNRIIGAL 671
            G+ ++    ++S +N  + A+
Sbjct: 445 KGLTTTGNSSLNSTSNTKVSAV 466


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 522 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCQETSCGVGVLL 358
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 360 VTYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q9F583 Cluster: Riorf172 protein; n=1; Agrobacterium
           rhizogenes|Rep: Riorf172 protein - Agrobacterium
           rhizogenes
          Length = 309

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 397 TMPGDILRRRCLALPTHSTIATMINATHSKIENSSGHDSVDENDRARF 254
           T+P DIL      LPT   + T  N T  K+ + S   SVD++D   F
Sbjct: 19  TLPNDILVEVAKHLPTDDPVETAANLTSFKLASPSVRASVDQSDVGTF 66


>UniRef50_A6RDA0 Cluster: Predicted protein; n=5; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 342

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -2

Query: 435 HEYNYVLNNGSTELCQETS-----CGVGVLLFLHTARSRR*LMQHTPKLRIRAVMTAL 277
           H+ NY L   S  L Q  S     CGVG+   +   RS R L +H  K++  AV T+L
Sbjct: 133 HDQNYTLKE-SHNLAQGASKNGTPCGVGIPAKVSPFRSARMLCEHATKIKFHAVSTSL 189


>UniRef50_Q5NXW9 Cluster: Putative uncharacterized protein; n=4;
           Betaproteobacteria|Rep: Putative uncharacterized protein
           - Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum
           (strain EbN1))
          Length = 518

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -1

Query: 616 HTPADLHDAVPGYSGVHALAPSTETVAAGGKNNCAWRSVQECDSVLRL 473
           H  ADLHDA P     H L P ++  A  G N+ A R  + C+  LRL
Sbjct: 135 HCLADLHDAPPQSGSRHRLRPCSDAKAVPG-NSPADRGAR-CEQALRL 180


>UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 246

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 432 REIVRLMTTLPVPSNRNTLSHSCTERHAQLFLP 530
           R  V L   LPVP + NT +H C  RH   + P
Sbjct: 81  RRRVHLPLALPVPQSSNTTAHPCCARHTPNWFP 113


>UniRef50_A7F8S9 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 267

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 498 CTERHAQLFLPPAATVSVEGANACTPEYPGTASCKSAGV 614
           C E H++  LPPA   S+EGA    P++ G  S  +AGV
Sbjct: 153 CEEIHSRAELPPAHRASIEGARR-FPDHLGLISYDTAGV 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,072,839
Number of Sequences: 1657284
Number of extensions: 13563878
Number of successful extensions: 34654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34638
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)