Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    29   0.50 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.7  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   3.5  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.7  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   4.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.1  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V G N  T 
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSAGQQMDSVT 650
            +       K+  +C+++   M+++T
Sbjct: 1076 QRITDVILKAFSICAASQGCMNNLT 1100


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTA 593
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 594 S 596
           +
Sbjct: 461 N 461


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 565 ALAPSTETVAAGGKNN 518
           A +PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CINHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 196 NIRIGIKPRAFEI*RDVDLEI*RDHSHQRCHDRSNSQF 309
           ++R+GIK R F    DV L++ +    ++ H+   +QF
Sbjct: 312 SVRLGIKERIFRQNLDVLLQLDKSERIEKIHNAYENQF 349


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 GTASCKSAGVCSSAGQQMDSVTN 653
           G  SC S GVC+SA +Q   +TN
Sbjct: 411 GMGSCAS-GVCTSASRQCKKLTN 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,105
Number of Sequences: 5004
Number of extensions: 56714
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)