Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    31   0.91 
03_05_1070 + 30125131-30127029                                         29   3.7  
03_02_0925 - 12440917-12441560,12441675-12441810                       29   4.8  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   6.4  
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    28   8.5  
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    28   8.5  

>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
            3523189-3523270,3523420-3523692,3523953-3524162,
            3524252-3524337,3525197-3525289,3526003-3526227,
            3526320-3526930,3529328-3529395,3529491-3529679,
            3529773-3529901,3530013-3532484
          Length = 1579

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = -1

Query: 643  LSIC*PALLHTPADLHDAVP---GYSGVHALAPS-TETVAAGGKNNCAWRSVQECDSVLR 476
            L  C   LL T    H+ V    GY G   +A S  + +    K N  W++V+   + L+
Sbjct: 1062 LRSCDSDLLQTKEKNHNEVHNGLGYPGTRPIASSDVDLIKPTVKVNGVWKNVEYTKATLK 1121

Query: 475  LDGTGKVVINLTISRV*LCSKQR 407
             +G GK   N  +  +    K R
Sbjct: 1122 ANGVGKNAENTKVPTIPSTQKSR 1144


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 565 ALAPSTETVAAGGKNNCAWRSVQECDS-VLRLD 470
           A+A      A GG+   AWRS    DS VLRLD
Sbjct: 512 AMAARHSADAGGGRGEAAWRSTATQDSQVLRLD 544


>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 498 CTERHAQLFLPPAATVSVEGANACTPEY 581
           C   H +  LP  ATV+V   N C P Y
Sbjct: 85  CAGDHRRSCLPGGATVTVTATNFCPPNY 112


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 610 PADLHDAVPGYSGVHALAPSTETVAAGGKNNCAWRSVQE 494
           PADL D + G  G H    ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/69 (26%), Positives = 24/69 (34%)
 Frame = +3

Query: 453 TTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTASCKSAGVCSSAGQ 632
           T  P+P+ +  L H     HA    PP A    +GA          A  K+A      G 
Sbjct: 161 TATPLPAPQQRLRHGRRCYHALSLRPPRAASGDDGAGGEVEPAAPAAPAKTATATDDGGD 220

Query: 633 QMDSVTNRI 659
             +    RI
Sbjct: 221 DFEERVLRI 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,714
Number of Sequences: 37544
Number of extensions: 381315
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)