Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.30 
SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      29   2.8  
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)            29   4.9  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               28   8.6  
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               28   8.6  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQL 521
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 538 QRFPSKGLTHVHLSTLEQRHANRRVCVAVLVSRW 639
           Q+   KGLTH +LS LE+    +R  +AV   RW
Sbjct: 109 QKTAYKGLTHANLSKLEE--VGQRAGLAVTAERW 140


>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
          Length = 404

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 284 VMTARILNFGVCCINHRRDRAVC 352
           V T  +  FGV C NH +DR  C
Sbjct: 9   VTTDAVFEFGVGCQNHHKDRTSC 31


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 498  CTERHAQLFLPPAATVSVEGANAC-TPEYPGTASCKSAGV 614
            C  R  QL+LP  AT  +EG  +C  P+  G      AGV
Sbjct: 1145 CDVRDDQLYLPAYATRPLEGQTSCKCPDVVGCGVMWPAGV 1184


>SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 215

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +3

Query: 525 LPPAATVSVEGANACTPE---YPGTASCKSAGVCSSAGQQMDSV--TNRIIGALQ 674
           LPP    +++G   CTP+    P T +  S  V SS      S+  T   +G LQ
Sbjct: 134 LPPKKRCNLDGKKRCTPKVTPIPSTTATPSTAVTSSTPPTSTSMQTTKHSVGHLQ 188


>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +3

Query: 525 LPPAATVSVEGANACTPE---YPGTASCKSAGVCSSAGQQMDSV--TNRIIGALQ 674
           LPP    +++G   CTP+    P T +  S  V SS      S+  T   +G LQ
Sbjct: 134 LPPKKRCNLDGKKRCTPKVTPIPSTTATPSTAVTSSTPPTSTSMQTTKHSVGHLQ 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,441,024
Number of Sequences: 59808
Number of extensions: 463199
Number of successful extensions: 1310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)