Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ314790-1|CAC40818.1| 1057|Homo sapiens putative zinc finger pr...    35   0.33 
BC030540-1|AAH30540.1|  615|Homo sapiens ZFR protein protein.          34   0.44 
AB208996-1|BAD92233.1|  489|Homo sapiens ST8 alpha-N-acetyl-neur...    30   7.2  

>AJ314790-1|CAC40818.1| 1057|Homo sapiens putative zinc finger
           protein protein.
          Length = 1057

 Score = 34.7 bits (76), Expect = 0.33
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 432 REIVRLMTTL--PVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTASCKS 605
           +++V+L T L  P+PS    +    T   A     P A+ S   AN CT      A+   
Sbjct: 385 QKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAANNCTVNTSSVATSSM 444

Query: 606 AGVCSSAGQQMDSVTNRIIGAL 671
            G+ ++    ++S +N  + A+
Sbjct: 445 KGLTTTGNSSLNSTSNTKVSAV 466


>BC030540-1|AAH30540.1|  615|Homo sapiens ZFR protein protein.
          Length = 615

 Score = 34.3 bits (75), Expect = 0.44
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 432 REIVRLMTTL--PVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTASCKS 605
           +++V+L T L  P+PS    +    T   A     P A+ S   AN CT      A+   
Sbjct: 407 QKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAANNCTVNTSSIATSSM 466

Query: 606 AGVCSSAGQQMDSVTNRIIGAL 671
            G+ ++    ++S +N  + A+
Sbjct: 467 KGLTTTGNSSLNSTSNTKVSAV 488


>AB208996-1|BAD92233.1|  489|Homo sapiens ST8
           alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
           variant protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +3

Query: 462 PVPSNRNTLSHSCTERHAQL---FLPPAATVSVEGANA---CTPEYPGTASCKSAGVCSS 623
           P P +   L+H+ T  H         PA+   + G  +     P  PG  +CK A V S 
Sbjct: 62  PPPPHARALTHTHTHTHTHTHTHIYTPASCWPLNGPISPVSLNPAQPGMRNCKMARVASV 121

Query: 624 AGQQMDSVTNRIIGALQVLS 683
            G  M SV   I+  +  +S
Sbjct: 122 LGLVMLSVALLILSLISYVS 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,550,718
Number of Sequences: 237096
Number of extensions: 1998083
Number of successful extensions: 4720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4720
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)