Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    28   7.6  
AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical
           protein C50B6.6 protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 664 PIILFVTLSIC*PALLHTPADLHDAVPGYSGVHALAPSTET 542
           P+  F TL  C P   H   DL+D  PG S +H L  +  T
Sbjct: 158 PVFCFATLPRCHPKQDHYKQDLYDKNPGIS-IHVLCNTVVT 197


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 616 HTPADLHDAVPGYSGVHALAPSTETVAAGGKNNCAWRSVQE 494
           + P   ++ VP Y  +    P TE+    G ++  W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 567  CTPEYPGTASCKSAGVCSSAGQQMD 641
            C P+ PG + C +AG C S  +  D
Sbjct: 1907 CDPDDPGFSCCGAAGYCGSGKEYCD 1931


>AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical
           protein Y41D4A.1 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 543 VSVEGANACTPEYPGTASCKSAGVCSSAGQQMDSVTNRII 662
           ++ E +  CTP Y G ++C +   C+S   Q  +V N II
Sbjct: 57  IACEQSYQCTPYYSGVSTCINNFCCTSPNSQ--NVPNPII 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,434
Number of Sequences: 27780
Number of extensions: 333779
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)