Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j04
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05632.1 68417.m00875 hypothetical protein                          30   1.8  
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    29   3.1  
At1g05900.2 68414.m00619 endonuclease-related similar to endonuc...    29   4.0  
At1g09790.1 68414.m01098 phytochelatin synthetase-related contai...    28   7.1  

>At4g05632.1 68417.m00875 hypothetical protein
          Length = 197

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 361 ALPTHSTIATMINATHSKIENSSGHDSVDENDRARFLDRRPVIFQKHVVLSQF 203
           AL  H     +     S +E SS HD  D  DR   +DR   I+ + +++  F
Sbjct: 72  ALEHHKLYMHLTKLRQSVLEASSIHDRNDNVDRELLVDREDFIYLRKLIVGWF 124


>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to Lipopolysaccharide-responsive and beige-like anchor
            protein (CDC4-like protein) (Beige-like protein)
            (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 541  VAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISR 431
            V+AG +     RS+   + V R +G GK++ +LT+++
Sbjct: 1210 VSAGDQGQIIVRSMNTLEVVKRYNGAGKIITSLTVTQ 1246


>At1g05900.2 68414.m00619 endonuclease-related similar to
           endonuclease III [Homo sapiens] GI:1753174; contains
           Pfam profile PF00633: Helix-hairpin-helix motif
          Length = 386

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
 Frame = +3

Query: 396 VPWNR----CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVE--- 554
           V WN     C++ +  R   RL       + + T S   T    Q +LP    V++    
Sbjct: 280 VAWNDVQGICVDTHVHRICNRLGWVSKPGTKQKTSSPEETRVALQQWLPKGEWVAINFLL 339

Query: 555 ---GANACTPEYPGTASCKSAGVCSSAGQQMDSVTNRI 659
              G   CTP  P   +C    +C SA ++  S ++++
Sbjct: 340 VGFGQTICTPLRPHCGTCSITEICPSAFKETPSTSSKL 377


>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 454

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 471 SNRNTLSHSCTERHAQLFLPPAATVSVEGANAC 569
           ++   L H C ER   + L P A+++V+ AN C
Sbjct: 109 ASSGNLPHCCLERPTIVDLLPGASLNVQVANCC 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,099,171
Number of Sequences: 28952
Number of extensions: 297001
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)