Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j03
         (555 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB...   264   4e-71
AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p pro...   263   1e-70
AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA...   263   1e-70
AY058318-1|AAL13547.1|  872|Drosophila melanogaster GH08353p pro...    31   1.4  
AE014296-3271|AAF49077.2|  872|Drosophila melanogaster CG14183-P...    31   1.4  
AY119656-1|AAM50310.1|  460|Drosophila melanogaster SD02418p pro...    28   9.7  
AJ010073-1|CAB45234.1|  614|Drosophila melanogaster XRCC1 protei...    28   9.7  
AF132142-1|AAD33589.1|  614|Drosophila melanogaster DNA repair p...    28   9.7  
AE014298-727|AAF46025.1|  614|Drosophila melanogaster CG4208-PA ...    28   9.7  
AE014296-1211|AAF50597.1|  460|Drosophila melanogaster CG8616-PA...    28   9.7  

>AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB,
           isoform B protein.
          Length = 147

 Score =  264 bits (648), Expect = 4e-71
 Identities = 121/147 (82%), Positives = 131/147 (89%)
 Frame = +2

Query: 35  MAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVK 214
           M +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+K
Sbjct: 1   MQQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIK 60

Query: 215 KLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGE 394
           KLR+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGE
Sbjct: 61  KLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGE 120

Query: 395 FSVTYKPVKHGRPGIGATHSSRFIPLK 475
           F++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 FALTYKPVKHGRPGIGATHSSRFIPLK 147


>AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p
           protein.
          Length = 148

 Score =  263 bits (644), Expect = 1e-70
 Identities = 120/145 (82%), Positives = 130/145 (89%)
 Frame = +2

Query: 41  EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 220
           +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKL
Sbjct: 4   QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63

Query: 221 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 400
           R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64  RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123

Query: 401 VTYKPVKHGRPGIGATHSSRFIPLK 475
           +TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148


>AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA,
           isoform A protein.
          Length = 148

 Score =  263 bits (644), Expect = 1e-70
 Identities = 120/145 (82%), Positives = 130/145 (89%)
 Frame = +2

Query: 41  EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 220
           +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKL
Sbjct: 4   QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63

Query: 221 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 400
           R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64  RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123

Query: 401 VTYKPVKHGRPGIGATHSSRFIPLK 475
           +TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148


>AY058318-1|AAL13547.1|  872|Drosophila melanogaster GH08353p
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 334
           L+KK  R KK  PP EK    K +    ++  E+V  +  IY+
Sbjct: 20  LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62


>AE014296-3271|AAF49077.2|  872|Drosophila melanogaster CG14183-PA
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 334
           L+KK  R KK  PP EK    K +    ++  E+V  +  IY+
Sbjct: 20  LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62


>AY119656-1|AAM50310.1|  460|Drosophila melanogaster SD02418p
           protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 304 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 161
           L  ++H+ +Q+  H  WLL+  S FL          W   +++  PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249


>AJ010073-1|CAB45234.1|  614|Drosophila melanogaster XRCC1 protein
           protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 211 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 306
           +E   ++ER  S+ E + R     KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379


>AF132142-1|AAD33589.1|  614|Drosophila melanogaster DNA repair
           protein XRCC1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 211 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 306
           +E   ++ER  S+ E + R     KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379


>AE014298-727|AAF46025.1|  614|Drosophila melanogaster CG4208-PA
           protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 211 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 306
           +E   ++ER  S+ E + R     KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379


>AE014296-1211|AAF50597.1|  460|Drosophila melanogaster CG8616-PA
           protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 304 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 161
           L  ++H+ +Q+  H  WLL+  S FL          W   +++  PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,684,066
Number of Sequences: 53049
Number of extensions: 438981
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)