Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j03
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   207   4e-54
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   3.0  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   3.0  
U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione s-t...    27   9.1  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  207 bits (506), Expect = 4e-54
 Identities = 100/150 (66%), Positives = 118/150 (78%)
 Frame = +2

Query: 26  TRNMAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMA 205
           T++ A + E LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +A
Sbjct: 3   TQDDAHLAE-LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLA 61

Query: 206 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHY 385
           L+ K+++AKK A   EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG Y
Sbjct: 62  LIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFY 121

Query: 386 LGEFSVTYKPVKHGRPGIGATHSSRFIPLK 475
           LGEF+++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 LGEFAISYKPVKHGRPGIGATHSSRFIPLK 151


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 45  STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 146
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 45  STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 146
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione
           s-transferase protein23 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 15  LSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 146
           L  K  T +++     K  +   +L GEL+ I  L C  +N  N
Sbjct: 97  LRTKYFTMIKTDYEDGKEAYITETLPGELLRIEKLFCTFNNGEN 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,668
Number of Sequences: 27780
Number of extensions: 220878
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)