Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j02
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.5  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 643 PMTMNVKIHHHQMSL 687
           P T N  +HHHQ SL
Sbjct: 127 PPTDNSHVHHHQTSL 141


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 690 LQTHLMMMNLYVHCHR----VDQDLHGTWIFQLQNL 595
           LQ +  + NL +H  +    +D ++ G W  +LQNL
Sbjct: 584 LQFNDGLKNLEIHVTKDTDTLDNEMRGAWPLKLQNL 619


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 499 TTQSSNSTRALMKNLGATPF 440
           T Q S  TR  +KN  A+P+
Sbjct: 249 TVQLSTCTRTTLKNNRASPY 268


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 252 SDDEEETKRVVRSMKEKRYEELEGII 329
           SD++EE +   +S K K Y    G +
Sbjct: 41  SDNDEEERPSFKSRKPKNYSAPIGFV 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,127
Number of Sequences: 336
Number of extensions: 2384
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)