Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j02
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    71   2e-13
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.63 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   2.6  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   3.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   3.4  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   3.4  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   4.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 41/129 (31%), Positives = 70/129 (54%)
 Frame = +3

Query: 252 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 431
           S DEEE +RVV+S K+KRYEE    + +I+N     ++      F+ L K   +      
Sbjct: 162 SSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSSNNWIVVSNEFDHLNKVSQKC----- 216

Query: 432 KEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAE 611
            +E G  P  +I  L  LD  +  A  ++   K+L   N +A  +L+Q++RK  + F+++
Sbjct: 217 -KEAGRNPPPYIEFLSALDQKLESA--DKAFIKSLDAANGRAFNALKQRVRKNNRQFQSD 273

Query: 612 ISKFREDPD 638
           I ++R+DP+
Sbjct: 274 IDRYRKDPE 282


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 25/127 (19%), Positives = 50/127 (39%)
 Frame = +3

Query: 261 EEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 440
           +EET        ++  + LE +   +R   K +DF  +L    E       A P  +   
Sbjct: 598 QEETLIKANETIDQLTKMLEEVSDQLRYSLKERDFFRSLVQENEKLLDMAPATPNSKLNT 657

Query: 441 NGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISK 620
           N +    + R+L+ L+       NE E+ K++S+   K        L+    + + +++ 
Sbjct: 658 NLIEQTSYQRSLIRLEQLT----NELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTS 713

Query: 621 FREDPDL 641
              +  L
Sbjct: 714 LTSERSL 720


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 252  SDDEEETKRVVRSMKE----KRYEELEGIIHSIRNHRKIKDFSSALASFEE-LQKAYTRA 416
            S +E E+  V    K+    K+ EE+  +   +  +  I DFS++ A F   +QK + + 
Sbjct: 1548 SSEEAESASVHADTKDLENLKKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKR 1607

Query: 417  APVVQKE 437
              ++QK+
Sbjct: 1608 REILQKD 1614


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +3

Query: 297 EKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRAL 476
           E  +  L  +++S ++H       S++  +  L K Y+++A  V   ENG+   +  R +
Sbjct: 116 EAAHRFLSSLVNSWKDHIVSMQMISSVLKY--LDKVYSKSADKVPVNENGI---YIFREV 170

Query: 477 VELDDWVVG 503
           V L+ + +G
Sbjct: 171 VLLNSFEIG 179


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 510 NEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLPDD 650
           N  E+ K  +K N +    +  K +KY    +AEISKF+ D +  +D
Sbjct: 156 NINESYKNETKSNQRLGEDVPSK-KKYPHSMDAEISKFKWDSNNNND 201


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 30/84 (35%), Positives = 41/84 (48%)
 Frame = +3

Query: 348 RKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREAR 527
           ++++ F  AL SF      Y+ A  +V   ENG +P   I  L+EL    VG       R
Sbjct: 365 KRLRPFDKALKSF-----CYSDALDMVL--ENG-SPVLIITMLIELLH--VGG-----LR 409

Query: 528 KALSKGNSKALTSLRQKLRKYTKD 599
            ALS  +  +LT L   LRKY +D
Sbjct: 410 IALSNRDDLSLTPLINFLRKYIRD 433


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 228 APAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEEL 395
           AP  + + +DD  E KR   + +++R       +HSI   R+  + SS   S  ++
Sbjct: 10  APVSLPSLNDDALEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQV 65


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 486 DDWVVGAWNEREARKALSKGNS---KALTSLRQKLRKYTKDFEAEISKFREDPDL 641
           D + + A  ER  R A  + N    KAL  L  KL K   D+E    +F ++ D+
Sbjct: 440 DTFSINAAAERAGRLASERENKIRLKALRELLAKLPKPKNDYELMEPRFADETDV 494


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 525 RKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLPDD 650
           RK L +GN K   +L+QK+ +   D   + +  R+  D  D+
Sbjct: 47  RKQLKEGNKKQKRALQQKISQMEADLSQKHATERQKLDKGDE 88


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3    TYEVSRGQGLYLRAFFLFATNLLSLSSED--CLKTEYLLCF*YKTKH*LTLVNM 158
            T+  S    LYL+  +LF+  L S  +ED   L +E L  F Y  +H   LV +
Sbjct: 1250 TFLESSNPALYLKPQYLFSVQLASDFTEDSFTLTSECLRYFNYGHQHRRGLVTV 1303


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 514 SFHAPT---TQSSNSTRALMKNLG 452
           SFHAPT   T SS+ST +L  N G
Sbjct: 815 SFHAPTVSSTTSSSSTTSLAANKG 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,401
Number of Sequences: 5004
Number of extensions: 44260
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)