Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j02
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 102 3e-22
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 101 7e-22
09_01_0007 + 212984-213949 32 0.49
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 32 0.49
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 31 0.65
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 31 1.1
10_08_0974 + 21969713-21971914 29 4.6
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 28 6.1
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 28 8.0
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 28 8.0
05_01_0146 - 953957-956278,956468-956786,957185-957213 28 8.0
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 102 bits (244), Expect = 3e-22
Identities = 53/135 (39%), Positives = 86/135 (63%)
Frame = +3
Query: 252 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 431
SD+ + +RVVRS+K+KR EEL+ + +RN KI D+ + SFE+L K + VV+
Sbjct: 369 SDESDSGQRVVRSLKDKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQLEK---VVR 425
Query: 432 KEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAE 611
E+ P +I+ALV L+D++ A +EA+K +S N+KAL +++QKL+K K +E
Sbjct: 426 VNESSTVPNMYIKALVLLEDFLAEALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYENL 485
Query: 612 ISKFREDPDLPDDNE 656
I + RE P+ +D++
Sbjct: 486 IQECREHPERFEDDD 500
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 101 bits (241), Expect = 7e-22
Identities = 52/135 (38%), Positives = 86/135 (63%)
Frame = +3
Query: 252 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 431
SD+ + +RVVRS+K+KR EEL+ + +RN KI D+ + SFE+L K + VV+
Sbjct: 53 SDESDSGQRVVRSLKDKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQLEK---VVR 109
Query: 432 KEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAE 611
E+ P +++ALV L+D++ A +EA+K +S N+KAL +++QKL+K K +E
Sbjct: 110 VNESTTVPNMYVKALVLLEDFLAEALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYENL 169
Query: 612 ISKFREDPDLPDDNE 656
I + RE P+ +D++
Sbjct: 170 IQECREHPERFEDDD 184
>09_01_0007 + 212984-213949
Length = 321
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 APAPVYTFSDDEEETKRVVRSMKEK-RYEELEGIIHSIRNHRKI-KDFSSALASFEELQK 401
AP P+ SD+EEE +S +E + + I+ ++ HR+ + S A F+ELQ
Sbjct: 177 APGPIVLSSDEEEEEPARKKSCRENWSFSDAVKILTALTAHRQAGGELPSGHALFDELQH 236
Query: 402 AYTR 413
+R
Sbjct: 237 QLSR 240
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 252 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 431
S D+E+ K +RS++E+ +E HS HRK+K E++ A+ +A ++
Sbjct: 293 SKDQEKVKAALRSLQEEIEDERHLRKHSESLHRKLK------KELSEMKSAFVKAVKDLE 346
Query: 432 KEE 440
KE+
Sbjct: 347 KEK 349
>10_08_0425 - 17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 264 EETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKA-YTRAAPVVQKEE 440
+E +R +R KE+ +E+E + IR + + + L + KA +T + P ++K+
Sbjct: 878 KEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDP 937
Query: 441 NGVA 452
G A
Sbjct: 938 QGRA 941
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 222 VRAPAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQK 401
V +PAP + + EE++ + R+ R + + +++ ++N + K+ + A ++ K
Sbjct: 265 VSSPAPKSSSTSVEEQSPLIQRNNHRDRGQYVRPVLNPVQNMSQWKEVKAQAAPAKKSNK 324
Query: 402 AYTRAAPVV-QKEENGVAPRFFIRALVELDDWVVGAWN 512
+ P V EN + + A L W+V + N
Sbjct: 325 ENVNSVPKVGATPENSIKKEVSVDA--SLSTWLVSSDN 360
>10_08_0974 + 21969713-21971914
Length = 733
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 550 LFPFDRAFRASRSFHAPTTQSSNSTRALMKNLGATPF 440
L PF R+ RA+ + P T S RAL+ G PF
Sbjct: 151 LTPFLRSPRAAAAAQDPATLSKRKLRALLTTPGPAPF 187
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +3
Query: 414 AAPVVQKEENGV--APRFFIRALV----ELDDWVVGAWNEREARKALSKGNSKALTSLRQ 575
A P +Q E+ G A R ++++ E+ + W+ R+ ++ LS+ + L S
Sbjct: 92 AGPAIQTEDTGFLRANRLCVQSVDMIVGEIRGGIKSPWSRRKRKRVLSRQQWEGLFSANG 151
Query: 576 KLRKYTKDFEAEISKFREDPDL 641
KLR K F ++ +P +
Sbjct: 152 KLRDRGKKFLKKVRSGGIEPGI 173
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 EEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASF-EELQKAYTRAAPVVQKE 437
++E + K + +LE I +R+ R + FS+ ASF EE + R P + +
Sbjct: 247 KDEALHYFKIYKAEVENQLERKIKRLRSDRGREYFSNEFASFCEEFGIIHERTPPYLP-Q 305
Query: 438 ENGVAPR 458
NGVA R
Sbjct: 306 SNGVAER 312
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 483 LDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYT--KDFEAEISKFREDPDLPDD 650
LDD + +ER K KA T LR+ Y K E+E+S +++DP LP D
Sbjct: 618 LDDELGFLVDERAVLKHFDWPERKADT-LREAAFGYQDLKKLESEVSNYKDDPRLPCD 674
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/98 (24%), Positives = 49/98 (50%)
Frame = +3
Query: 339 RNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNER 518
+ R ++D ++AL+ EE KA + KE++ AL ++ D + + +
Sbjct: 496 KEKRAVEDLTAALS--EESDKAKEAHERYLSKEDDHE------HALAQIGDLKMALKSTK 547
Query: 519 EARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFRED 632
E+ + + + +T LR+ + K EAE++K+RE+
Sbjct: 548 ESYEVMLDEANYDITCLRKNVDK----LEAEVNKYREE 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,073
Number of Sequences: 37544
Number of extensions: 257934
Number of successful extensions: 853
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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