Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j02
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0) 95 6e-20
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 31 0.88
SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 31 0.88
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 30 2.0
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 4.7
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79) 28 6.2
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 28 6.2
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06) 28 8.2
SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 28 8.2
>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
Length = 564
Score = 94.7 bits (225), Expect = 6e-20
Identities = 50/87 (57%), Positives = 62/87 (71%)
Frame = +3
Query: 384 FEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALT 563
FE L KA+T+A VV KE G+ P FFIRAL EL+D+V W + E RK LSK N++AL
Sbjct: 18 FENLGKAFTKAKAVVDKE--GIPP-FFIRALSELEDFVKENWEDAEGRKKLSKINARALA 74
Query: 564 SLRQKLRKYTKDFEAEISKFREDPDLP 644
+LRQKLRKY+KDFE +I K+RE P
Sbjct: 75 TLRQKLRKYSKDFEDDIEKYRESIGQP 101
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 31.1 bits (67), Expect = 0.88
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Frame = +3
Query: 246 TFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPV 425
+F +++ + + M K Y ELE + +I + R +S+L E++ + A
Sbjct: 214 SFREEKAKLDSSLMDMTAK-YAELEAQLETISHER-----TSSLGEMGEIKSEFDEATTT 267
Query: 426 VQKE--ENGVAPRFFIRALVELDDWVVGAWNEREARKA----LSKGNSKALTSLRQKLRK 587
+ E A + F + + L + + E+E KA +S + T LRQ+ +
Sbjct: 268 KESLSLELDKAKKNFEKIKIRLKNNIKSTREEKEKMKAEIEKISSEKHEICTKLRQEFEE 327
Query: 588 YTKDFEAEISKFRED 632
KD + +S RE+
Sbjct: 328 ALKDKDDVLSSLREE 342
>SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.1 bits (67), Expect = 0.88
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Frame = +3
Query: 243 YTFSDDEEETKRVVRSMKEKRY------EELEGIIHSIRNHRKIKDFSSALASFEELQKA 404
Y F DEEET+ VV +K++R + + S+ +D ++A S E L K
Sbjct: 453 YDFESDEEETEEVVDKIKKRRSSRASAGDGTDDATESMDTSDATQD-TTATISEERLNKF 511
Query: 405 YTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREARKAL 536
+ V K P +R+ ++ D ++E+E +KAL
Sbjct: 512 KSSLQQVFTKAHTQTLPLSDVRSAIDRDH-PRDKFSEQEFKKAL 554
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 31.1 bits (67), Expect = 0.88
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +3
Query: 294 KEKRYEELEGIIHSIRN-HRKIKDFSSALASFEE-LQKAYTRAAPVVQKEENGVAPRFFI 467
KE+R +E+E + H +I+ + E+ + T+ V+Q+ ++
Sbjct: 3445 KEQRIQEIERELKVYETKHTEIRVYEEKYVEIEKRYYELETKYYTVIQEMKDATVDNDIT 3504
Query: 468 RALVE-LDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKF-REDPDL 641
+ +E L V E+E K +G+ T R++L++ D AEIS+ +E L
Sbjct: 3505 KDELERLKKIVENDEKEKENLKRKLQGSDSDGTMERKRLQRDMSDARAEISRLEKEVKRL 3564
Query: 642 PDDNE 656
DD E
Sbjct: 3565 KDDQE 3569
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 513 EREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFRED 632
ER A+ + NSK+ + R++ R+ D EAE+S R++
Sbjct: 791 ERMVSSAMRRLNSKSSAAKRRRRRRKHVDLEAEVSGLRQE 830
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 216 PVVRAPAPVYTFSDDEEETKRV 281
PV+R P PV + +D E TKRV
Sbjct: 5 PVIRCPLPVNSNTDPERNTKRV 26
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +3
Query: 222 VRAPAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQK 401
V P+P + EE ++++ M K +ELE I R + K+ L EE Q+
Sbjct: 1058 VNEPSPFVKQTSVNEEEVKLLKEMFNKEQQELESRISLER--LRYKEEQQRLRDEEEQQR 1115
Query: 402 AYTRAAPVVQKEEN 443
A+ Q+EEN
Sbjct: 1116 AWLEKK--FQREEN 1127
>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
Length = 243
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 249 FSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVV 428
F E+E + + S++E+ E + HS+R R+ A+F++LQK VV
Sbjct: 101 FHQREKEFAQEIASLQEENKE----LKHSLRLEREALSLEYDHANFDKLQKLIDELEDVV 156
Query: 429 QKEENGV 449
++++ +
Sbjct: 157 KRKKEAI 163
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 28.3 bits (60), Expect = 6.2
Identities = 29/140 (20%), Positives = 59/140 (42%)
Frame = +3
Query: 240 VYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAA 419
+ ++++D E + +E+ E+ I+SI+ R+ + + EE+++
Sbjct: 1147 IASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDEEIRRLEAELE 1206
Query: 420 PVVQKEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKD 599
+EE +A R R ++ E EA + L N+ Q+ K K+
Sbjct: 1207 EERSREELRLAERETERVAKKMK-----KLQEEEAARQL---NAAQRGMSEQEREKLLKE 1258
Query: 600 FEAEISKFREDPDLPDDNER 659
+ ++KF E +L + ER
Sbjct: 1259 HDENMAKFSE--NLKKEQER 1276
>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
Length = 1231
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = +3
Query: 258 DEEETKRVVR-SMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQK 434
+ + T R +R S+ + E +E R R+ ++ + EE+++ ++ + QK
Sbjct: 909 ERDMTPRTMRKSLSKSTRERME------RKRREEEERAKEQMRIEEIEQEKSKQLQLQQK 962
Query: 435 EENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEI 614
EE + ++ EL+ + ER+ + K + L + LR+ + + E+
Sbjct: 963 EEEDRLRKKIMKEQRELEKMLQQKEKERQVERQKQKQLQEQLQEQEKALRERLQRQQEEL 1022
Query: 615 SKFREDPDLPDDNER 659
+ + L + E+
Sbjct: 1023 EEIEKVKQLEKEREK 1037
>SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 252 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVV 428
S+D ++++ + +EK E+ E + H +I+ S AL S +E ++ P +
Sbjct: 356 SEDNASFEQIMETAREKHREKYEWLYKKEEEHSEIQQASLALPSGKEGEQLMIEQRPAM 414
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 249 FSDDEEETK-RVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEEL 395
F +DEE T + RS K +E EGI+HS + + L++ + L
Sbjct: 454 FLNDEENTALKNNRSELSKAVKEAEGILHSDDARAMVVQYKETLSNLDNL 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,450
Number of Sequences: 59808
Number of extensions: 299876
Number of successful extensions: 1025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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