Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j02
         (691 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974162-1|ABJ52802.1|  418|Anopheles gambiae serpin 3 protein.        29   0.18 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   1.7  
Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    24   5.2  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    24   5.2  

>DQ974162-1|ABJ52802.1|  418|Anopheles gambiae serpin 3 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 0.18
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 513 EREARKALSKGNSKALTSLRQKLRKY 590
           ERE ++ALS GNS+A+  L+  L +Y
Sbjct: 89  ERELQQALSGGNSQAVPKLQDDLLQY 114


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
 Frame = +3

Query: 252  SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIK-DFSSALASFEELQKAYTRAAPVV 428
            +D +   +R ++S +E      +    S +N +K + DF +     EELQK    A    
Sbjct: 779  ADGKGHRERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQA 838

Query: 429  QKEENGVAPRFFIRALVELD---DWVVGAWN--EREARKALSKGNS-----KALTSLRQK 578
             K E  +A     + LVE+    D +  A    +++ ++   K NS     KA    R K
Sbjct: 839  VKLEEQIAA--LQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDK 896

Query: 579  LRKYTKDFEAEISKFREDPDLPDDNERK 662
            L K   + + EI K +E+      NE K
Sbjct: 897  LLKQNDELKLEIKK-KENEITKVRNENK 923


>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 300 KRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAY 407
           +R   +  I +++  HR+++  +SA  S   L KAY
Sbjct: 143 RRDPNVNWICNAVHKHRELRGLTSAGKSSRGLGKAY 178


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 492 WVVGAWNEREARKALSKGNS 551
           WVVG  N+  ARK  S+  S
Sbjct: 48  WVVGLQNDEAARKLASRSMS 67


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,163
Number of Sequences: 2352
Number of extensions: 9382
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)