Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j02
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    98   6e-21
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    79   3e-15
At5g21900.1 68418.m02539 expressed protein                             30   1.7  
At1g10800.1 68414.m01239 hypothetical protein                          29   2.9  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   5.1  
At2g22720.3 68415.m02692 expressed protein                             28   6.7  
At2g22720.2 68415.m02691 expressed protein                             28   6.7  
At2g22720.1 68415.m02693 expressed protein                             28   6.7  
At5g05870.1 68418.m00645 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.9  
At4g02720.1 68417.m00368 expressed protein temporary automated f...    27   8.9  
At3g54750.2 68416.m06058 expressed protein                             27   8.9  
At3g54750.1 68416.m06057 expressed protein                             27   8.9  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    27   8.9  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 47/134 (35%), Positives = 85/134 (63%)
 Frame = +3

Query: 255 DDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQK 434
           DD+ +TKRVV+  K+KR+EE+   +  ++N  KI D+ S   +F+++ K   +   + + 
Sbjct: 43  DDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEA 102

Query: 435 EENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEI 614
            +    P  +I+ LV L+D++  A   +EA+K +S  NSKAL S++QKL+K  K +E +I
Sbjct: 103 VK---PPTLYIKTLVMLEDFLNEALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDI 159

Query: 615 SKFREDPDLPDDNE 656
           +K+RE P++ ++ +
Sbjct: 160 NKYREAPEVEEEKQ 173


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 42/130 (32%), Positives = 76/130 (58%)
 Frame = +3

Query: 267 ETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENG 446
           +TKRVV+  K+KR+EE+   I ++++   I D      +FE+L K  +++          
Sbjct: 42  DTKRVVKPKKDKRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISKSVKT------- 94

Query: 447 VAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFR 626
             P  +I+ LV L+D++    +  + ++ +S  NSKAL ++RQKL+K    ++ +I +FR
Sbjct: 95  --PTLYIKTLVMLEDFLNE--DNMKTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFR 150

Query: 627 EDPDLPDDNE 656
           E P++ DD+E
Sbjct: 151 ESPEIEDDDE 160


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 270 TKRVVRSMKEKRYEELEGI-IHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENG 446
           T R +R + +K    L G+ I   +  +K K FSS+L  FE+L   Y   A +V   +  
Sbjct: 295 TYRALRILADKFGSTLRGLSIGGCQGIKKHKGFSSSLYKFEKLN--YLSVAGLVSVNDGV 352

Query: 447 VAPRFFIRALVELD 488
           V   F  R+ +  D
Sbjct: 353 VRSFFMFRSSILTD 366


>At1g10800.1 68414.m01239 hypothetical protein
          Length = 118

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 528 KALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLP 644
           +ALSK N   L +L +K  +  K  E E+++F+E+ D+P
Sbjct: 77  QALSKENRTLLETLAEK-DEVIKMLEEELNRFKENGDIP 114


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 525 RKALSKGNSKALTSLRQKLRKYTKDFEAEIS 617
           +  L  GN  A+  LR+K  K  K+FE E++
Sbjct: 553 KATLEDGNEVAVKRLREKTTKGVKEFEGEVT 583


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 273 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 440
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 490 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 545


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 273 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 440
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 593 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 648


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 273 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 440
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 261 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 316


>At5g05870.1 68418.m00645 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 464

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 264 EETKRVVRSMKEKRYEELEGIIHSIRN--HRKIKDFSSALASFEEL 395
           E  + V+R M E + EE+ G I  +R+   R +K   S+  S +EL
Sbjct: 405 EIERAVIRLMVESKGEEIRGRIKVLRDEVRRSVKQGGSSYRSLDEL 450


>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 252 SDDEEETKRVVRSMKEKRYEELEG-IIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVV 428
           SD EEE +R  R    KR +          R+HR+   +S +  S +E  KA   A+   
Sbjct: 142 SDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASSSG 201

Query: 429 QKEE 440
           ++E+
Sbjct: 202 EEED 205


>At3g54750.2 68416.m06058 expressed protein 
          Length = 589

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 625 RNLDISASKSLVYFLSFCLSEVRALLFPFDRAFRASRSFHAPTTQSSNSTRALMKNL 455
           R+L     K+L      C S+  A+      +  A RS +   TQS+   RA++KNL
Sbjct: 315 RSLYFMFRKNLCKVFYVCTSQFVAMFTGSCESGGAKRSCNGYITQSTRRLRAMLKNL 371


>At3g54750.1 68416.m06057 expressed protein 
          Length = 589

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 625 RNLDISASKSLVYFLSFCLSEVRALLFPFDRAFRASRSFHAPTTQSSNSTRALMKNL 455
           R+L     K+L      C S+  A+      +  A RS +   TQS+   RA++KNL
Sbjct: 315 RSLYFMFRKNLCKVFYVCTSQFVAMFTGSCESGGAKRSCNGYITQSTRRLRAMLKNL 371


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
 Frame = +3

Query: 285 RSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFF 464
           + ++ +  +ELEG+ H ++    +K+  S      E+ K    +   +++E+  V     
Sbjct: 514 KDLRRRVKDELEGVTHELKES-SVKN-QSLQKELVEIYKKVETSNKELEEEKKTVLS--L 569

Query: 465 IRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFR-EDPDL 641
            + +  ++  ++    EREARK+L     +A+ SL  ++ K T     E+ K      +L
Sbjct: 570 NKEVKGMEKQIL---MEREARKSLETDLEEAVKSL-DEMNKNTSILSRELEKVNTHASNL 625

Query: 642 PDDNE 656
            D+ E
Sbjct: 626 EDEKE 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,002
Number of Sequences: 28952
Number of extensions: 221542
Number of successful extensions: 768
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)