Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i24
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 46 3e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 45 6e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 1e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 1e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 1e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 3e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 42 6e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 42 6e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 42 6e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 6e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 8e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 41 8e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 41 0.001
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 40 0.001
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.002
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 39 0.004
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.006
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.007
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.007
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.007
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.007
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.007
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.013
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.013
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 37 0.013
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.013
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.017
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.017
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 36 0.022
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.022
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 36 0.022
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.039
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.039
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.039
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.039
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.039
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.051
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 35 0.051
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.051
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.051
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 35 0.068
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.068
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 35 0.068
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 34 0.090
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 34 0.12
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 34 0.12
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.12
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.12
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.12
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.12
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.16
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.16
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.21
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 33 0.21
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 33 0.21
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 33 0.21
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.27
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.27
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.27
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.36
At1g43680.1 68414.m05018 hypothetical protein 32 0.36
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.48
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.48
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.48
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 32 0.48
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 32 0.48
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.48
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.48
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 0.63
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.63
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.63
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.63
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 0.63
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.84
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 31 0.84
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 31 0.84
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 1.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.5
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 30 1.5
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 30 1.9
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 1.9
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 30 1.9
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 30 1.9
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 30 1.9
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 30 1.9
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 2.6
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 29 2.6
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 2.6
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 2.6
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 2.6
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 2.6
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 3.4
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 3.4
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 3.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 3.4
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 3.4
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 3.4
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 3.4
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.4
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 29 3.4
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.4
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.4
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.4
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 4.5
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 4.5
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 4.5
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 4.5
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 4.5
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 28 5.9
At5g22930.1 68418.m02681 hypothetical protein 28 5.9
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 28 5.9
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 28 5.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 5.9
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 5.9
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related... 28 7.8
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGG 315
V+VG+ ++ DL +LF +FG V D+ + FV+ + E A AIR N+TF G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 124 PQTKVFVGSL-PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 300
P +FV + P ++ D+ + FE +G V + FV T+E A A+ + HNS
Sbjct: 93 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNS 152
Query: 301 TFNGGVISVE 330
V+SVE
Sbjct: 153 KLLDKVVSVE 162
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRA 288
T V+V +L + E+L K+F FGV T C IM GFV+ + + AA A+ A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 289 LHNSTFN 309
L+ TF+
Sbjct: 284 LNGKTFD 290
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRA 288
+ ++V +L + + LR+ F FG +T C +M GFV T E+A AI
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 289 LH 294
++
Sbjct: 387 MN 388
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 288
K+FVGS+P+ + E++R FE+ G V E ++ C FV T + A AIRA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 289 LHNS-TFNGGVISVE 330
LHN T GG V+
Sbjct: 181 LHNQITLPGGTGPVQ 195
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 291
K+FVGSL + + +++ ++F +FG V + +M CGFV ++E A AAI L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 292 HNSTF 306
N T+
Sbjct: 272 -NGTY 275
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 288
K+FVGS+P+ + E++R FE+ G V E ++ C FV T + A AIRA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 289 LHNS-TFNGGVISVE 330
LHN T GG V+
Sbjct: 181 LHNQITLPGGTGPVQ 195
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 291
K+FVGSL + + +++ ++F +FG V + +M CGFV ++E A AAI L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 292 HNSTF 306
N T+
Sbjct: 272 -NGTY 275
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDI------MNR-CGFVHMQTEEQAAAA 279
+ +T++ ++P S PED+R LFE++G V + ++ NR F+ M + E+AA A
Sbjct: 91 ISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATA 150
Query: 280 IRALHNSTFNGGVISVE 330
+++L + + G + V+
Sbjct: 151 LKSLESCEYEGRRLKVD 167
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 306
VFVG+ ++ DL +LF+++G V D+ + FV+ + E A AIR L N F
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 124 PQTKVFVGSL-PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 300
P +FV + P +K D+ K FE +G VT I FV +T+E A A+ A S
Sbjct: 91 PTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRS 150
Query: 301 TFNGGVISVE 330
V+SVE
Sbjct: 151 KILDRVVSVE 160
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRA 288
++FVGSL +G+ EDL+K+F G VTE I+ F+ T EQA A++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 289 LHNSTFNG 312
L + NG
Sbjct: 275 LKSPMING 282
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRC-GFVHMQTEEQAAAAIRA 288
T V+V +LP+ ++LRK F +FGV++ +M +RC GFV+ + E AA+A+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 289 LHNSTFNGGVISV 327
++ + V+ V
Sbjct: 289 MNGISLGDDVLYV 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTEC----DIMNRC---GFVHMQTEEQAAAAIRALH 294
+F+ +L + L + F FG + C D+ R GFV + EE A AAI L+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 295 NSTFN 309
N
Sbjct: 198 GMLMN 202
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRAL 291
VF G+ ++ DL +LF ++G V D+ FV+M+ E A AIRAL
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRAL 291
VF G+ ++ DL +LF ++G V D+ FV+M+ E A AIRAL
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 306
VF G+ ++ DL +LF ++G V D+ FV+M+ E A AIRAL F
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECD-----IMNR---CGFVHMQTEEQAAAA 279
P+TK++V L + + LR FE+FG + + + NR F+ +TEE+A A
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 280 IRALHNSTFNGGVISVE 330
I+ +H +G VI VE
Sbjct: 135 IQGMHGKFLDGRVIFVE 151
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 309
T+++VG L ++ DL +LF R+G V + D+ FV A A L F+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 310 GGVISVE 330
G I+VE
Sbjct: 71 GSRITVE 77
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 309
T+++VG L ++ DL +LF R+G V + D+ FV A A L F+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 310 GGVISVE 330
G I+VE
Sbjct: 71 GSRITVE 77
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 285
TK+++G L G+ L+ F F VTE +M GFV+ +E+ A +AI
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 286 ALHNSTFNGGVISV 327
A++ NG ISV
Sbjct: 91 AMNGQELNGFNISV 104
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Frame = +1
Query: 103 YKSVIMVPQ--TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHM 252
Y ++ +P ++VF+G LP+ EDLR L E G + E +M FV
Sbjct: 105 YSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164
Query: 253 QTEEQAAAAIRALHNSTFNGGVI 321
+T++ A AI LH+ F G I
Sbjct: 165 KTKDVAQKAIEELHSKEFKGKTI 187
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAI 282
P+ K+FVG LP+ +++ LF +G + + I+ C F+ +++EQA AA+
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 166
Query: 283 RALH 294
AL+
Sbjct: 167 EALN 170
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Frame = +1
Query: 106 KSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---------C-GFVHMQ 255
+ VI VP T +FV +LP + P L +LF+ FG + E I R C GF+ +
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFE 331
Query: 256 TEEQAAAAIRALHNSTF 306
T + ++A N+ F
Sbjct: 332 TVASVQSVLQAAKNTPF 348
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 303
T +FVG++ Q +DL+ +F +FG + I RCGFV A A+ L+ +
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQ 337
Query: 304 FNG 312
G
Sbjct: 338 LGG 340
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 124 PQTKVFVGSL-PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 300
P +FV + P ++ D+ + FE +G V + FV T+E A A+ + HNS
Sbjct: 67 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNS 126
Query: 301 TFNGGVISVE 330
V+SVE
Sbjct: 127 KLLDKVVSVE 136
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 285
+++FVG L DL + F RFG + +C IM GF+ +IR
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 286 ALHNSTFNGGVISV 327
+H F VISV
Sbjct: 67 EMHGRDFGDRVISV 80
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 291
K+FVG LP+ +++ LF ++G + + I+ C F+ +T+EQA +A+ ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 292 H 294
+
Sbjct: 167 N 167
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 288
K+FVG +P+ L LF+ F VV E +I+ C F+ + E+A + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 289 LHN 297
HN
Sbjct: 79 CHN 81
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 291
K+FVG LP+ +++ LF ++G + + I+ C F+ +T+EQA +A+ ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 292 H 294
+
Sbjct: 167 N 167
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 288
K+FVG +P+ L LF+ F VV E +I+ C F+ + E+A + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 289 LHN 297
HN
Sbjct: 79 CHN 81
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAI 282
++++FVG L L F+R+G +TEC IM GF+ A AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 283 RALHNSTFNGGVISV 327
+ +H VISV
Sbjct: 71 KHMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAI 282
++++FVG L L F+R+G +TEC IM GF+ A AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 283 RALHNSTFNGGVISV 327
+ +H VISV
Sbjct: 71 KHMHGRELGNKVISV 85
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 285
+K+FVG L G+ L++ F FG VTE ++ GFV E+ A AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 286 ALHNSTFNGGVISV 327
+ NG I V
Sbjct: 95 EMDGKELNGRQIRV 108
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 285
+K+FVG L G+ L++ F FG VTE ++ GFV E+ A AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 286 ALHNSTFNGGVISV 327
+ NG I V
Sbjct: 95 EMDGKELNGRQIRV 108
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 303
T VFVG L + L+ +F ++G + I RCGFV + A A+R L+
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Query: 304 FNGGVI 321
G +
Sbjct: 321 LGGTTV 326
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 291
K+FVG LP+ +++ LF +G + + I+ C F+ +++EQA AA+ AL
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 292 H 294
+
Sbjct: 161 N 161
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NR-------CGFVHMQTEEQAAAAI 282
+ K+FVG+LP + L LFE+ G V +++ NR GFV M T E+A A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 283 RALHNSTFNGGVISV 327
++ NG ++V
Sbjct: 172 EKFNSFEVNGRRLTV 186
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 288
+++VG+LP L +LF G V + +++ GFV M E + AI A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 289 LHNSTFNGGVISV 327
L G I V
Sbjct: 268 LDGQNLEGRAIKV 280
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-----RCGFVHMQTEEQAAAAIRALH 294
TK+FVG+L + +DLR+ FE+FG V + ++++ R T + +RAL
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQ 71
Query: 295 NS 300
NS
Sbjct: 72 NS 73
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 303
T +FVG L ++L+ +F +FG + I RCGFV + A A+ L+ +
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Query: 304 FNG 312
G
Sbjct: 320 LGG 322
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG--FVHMQTEEQAAAAIRALHNSTFN 309
++VGSL + DL +LF R+G + + + G F++ + E+A AA AL + N
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 310 G 312
G
Sbjct: 80 G 80
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 106 KSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 234
+ VI VP T +FV +LP + P L +LF+ FG + E I R
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVR 314
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 288
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 289 LHNSTFNGGVISV 327
++ +G VI+V
Sbjct: 67 MNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 288
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 289 LHNSTFNGGVISV 327
++ +G VI+V
Sbjct: 67 MNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 288
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 289 LHNSTFNGGVISV 327
++ +G VI+V
Sbjct: 67 MNGKELDGRVITV 79
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 285
TK+F+G L G+ LR F FG V + ++ GFV+ E A AAI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 286 ALHNSTFNGGVISV 327
+ NG I V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 285
TK+F+G L G+ LR F FG V + ++ GFV+ E A AAI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 286 ALHNSTFNGGVISV 327
+ NG I V
Sbjct: 95 EMDGKELNGRHIRV 108
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.051
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNR-CGFVHMQTEEQAAAAI 282
+ V V +L + ++ DL +LF FG VT C + M+R GFV + E A AI
Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
Query: 283 RALHNSTFNGGVISVE 330
L+ ++ ++ VE
Sbjct: 233 NKLNGYGYDNLILRVE 248
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHN 297
P ++VG+LP G +L F RFG + FV+ +E A AAI +L
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 298 STFNGGVISVE 330
+G + +E
Sbjct: 81 FPLSGNPLRIE 91
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.1 bits (77), Expect = 0.051
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 309
+FVG + EDLR+ F +FG V I CGFV + A AI +L+ +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 310 GGVI 321
+
Sbjct: 383 KNTV 386
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.1 bits (77), Expect = 0.051
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFG--VVTECDIMNRCGFVHMQTEEQAAAAIRALH 294
+ T +FVG L EDL++ F FG V + + CGFV A A+ L+
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360
Query: 295 NS 300
+
Sbjct: 361 GT 362
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 142 VGSLPQGSKPEDLRKLFERFGVVTECDIMN--RCGFVHMQTEEQAAAAIRALHNSTFNGG 315
V +L E LR+LF G V +C I + ++ E+A AA+ AL+N+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAAL-ALNNTEVFGR 413
Query: 316 VISVE 330
++VE
Sbjct: 414 ALNVE 418
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFG--VVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 300
T +FVG L EDL++ F FG V + + CGFV A A+ L+ +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 364
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 KSVIMVP-QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN 231
K ++M Q KV+VG+LP ++P+ LR F +FG + +++
Sbjct: 203 KKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLH 245
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRA 288
T V+V +L + + DL++LF FG +T +M R GFV+ + E A AI
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 289 LH 294
++
Sbjct: 179 MN 180
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAI 282
++V +L L +LF FG +T C +M GFV T E+A+ A+
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAM 280
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 279
P T +FV L + + E LR F +FG V + ++ GFV T E +A
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 280 IRALHNSTFNGGVISVE 330
I + +G VI E
Sbjct: 114 IAGMDGKFLDGWVIFAE 130
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRAL 291
+ + +LP ++P DLR FERFG + + + GFV + E AA A++ +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 292 HNSTFNGGVISV 327
++ G I++
Sbjct: 109 NHKVIGGREIAI 120
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 225
K+FVG LPQ + +DLR F RFG + + I
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 271
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTE 216
T++FV +P D R FER+G +T+
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITD 119
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 288
KV+VG+L + E L LF G V + GFV +EE AAI A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 289 LHNSTFNGGVISV 327
L+NS G I V
Sbjct: 238 LNNSLLEGQKIRV 250
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALH 294
TK+FVG L ++ + +R+ FE+FG + E ++ R T ++A AA+RA
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 295 N 297
N
Sbjct: 82 N 82
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTE----CDIMNRC---GFVHMQTEEQAAAAIRA 288
+ ++V ++ E+LRK F + G +T CD + GFV T E+A A++
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 289 LHNSTFNG 312
H F+G
Sbjct: 364 FHGQMFHG 371
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 294
VFV +LP+ L+ +F++FG + C + GFV + E+ A AAI+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL- 172
Query: 295 NST 303
NST
Sbjct: 173 NST 175
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NR-------CGFVHMQTEEQAAAAI 282
+ K+FVG+L + L LFE+ G V +++ NR GFV M + ++A A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 283 RALHNSTFNGGVISV 327
+ NG +++V
Sbjct: 209 EKFNRYDLNGRLLTV 223
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 279
P +V+VG+LP L +LF G V E ++ GFV M ++ A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 280 IRALHNSTFNGGVISV 327
I AL G I V
Sbjct: 302 ISALDGQNLEGRAIRV 317
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NR-CGFVHMQTEEQAAAAIRAL 291
K+FV +LP D+ +LF + G V +I+ NR FV M + E+A AAI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 292 HNSTFNGGVISV 327
+G +ISV
Sbjct: 156 DTFQVSGRIISV 167
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 288
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 289 LHNSTFNGG 315
++ S GG
Sbjct: 67 MNGSGGGGG 75
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 285
T+V+VG+L + + LR+ F +G V + +M GFV + +A AA+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 286 ALHNSTFNGGVISVE 330
+ NG +SV+
Sbjct: 63 GMDGKELNGRRVSVK 77
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG LP D + FE+FG T+ +M
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVM 140
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG LP D + FE+FG T+ +M
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVM 140
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + +++R+ FE+FG + E I+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + +++R+ FE+FG + E I+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN 231
K+FVG L + E+ + FERFG T+ +M+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMH 153
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTE 216
K+FVG + + + E L++ F R+G V E
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLE 34
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 309
+FVG L EDL + F FG V I CGFV + A AI L+ +
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 310 GGVI 321
+
Sbjct: 389 KNTV 392
>At1g43680.1 68414.m05018 hypothetical protein
Length = 247
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -2
Query: 239 PHRFIISHSVTTPKRSNSFLRSSGLEPCGRLPTNTF 132
PHRF S + +TP S SFL +SG P R PT F
Sbjct: 174 PHRFSSSSNSSTPIASASFLAASGWRPTTR-PTYEF 208
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG LP E+ + F++FG + + +M
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVM 142
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG LP E+ + F++FG + + +M
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVM 142
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG LP E+ + F++FG + + +M
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVM 142
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVV--------TECDIMNRCGFVHMQTEEQAAAAIR 285
TK++VG LP ++ E L F+RFG + E D GFV + E A A +
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 286 ALHNSTFNGGV 318
N T G +
Sbjct: 73 D-PNPTIEGRI 82
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 285
++V++G +P + DL+ G VTE IM FV ++++ AA AI
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 286 ALHNSTFNG 312
L+N+ F G
Sbjct: 152 TLNNTDFRG 160
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-MNRCG-------FVHMQTEEQAAA 276
V K+F+ L + + LR FE FG + E I M++ F+ TEE A
Sbjct: 279 VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGT 338
Query: 277 AIRALHNSTFNGGVISVE 330
A++ ++ NG +I V+
Sbjct: 339 ALKEMNGKIINGWMIVVD 356
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAI 282
Q +FV L + E+L+ FE +G +TEC ++ GFV +T + A AA+
Sbjct: 162 QRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
Query: 283 RALHNSTFN 309
+ +N
Sbjct: 222 KNPEKRMYN 230
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L ++ E LR+ FE++G + E ++
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + E ++K FE+FG + E ++
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + E ++K FE+FG + E ++
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + E ++K FE+FG + E ++
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + +++R+ F++FG + E I+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR------CGFVHMQTEEQAAAAIRALHN 297
++V +L L ++F FG + C ++ GFV TE+ A +A ALH
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 298 STFNG 312
S G
Sbjct: 174 SMVYG 178
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTEC----DIMNRC---GFVHMQTEEQAAAAIRALH 294
VF+ +L + L + F FG + C D++ R GFV + EE A AAI L+
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 295 NSTFN 309
N
Sbjct: 194 GMLLN 198
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 421 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPY 519
PV H+PPP Y+ P P + PP PY
Sbjct: 388 PVYHSPPPPKEKYVYKSPPPPPVHHYSPPHHPY 420
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 421 PVRHAPPPRDAPYM-RDRPGPVRGYERGP---PAAPYDERYAY 537
PV H+PPP Y+ + P PV+ Y P P E+Y Y
Sbjct: 360 PVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKEKYVY 402
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC--------GFVHMQTEEQAAAA 279
P +FVG L + + LR++ ++G + ++ GFV +TE++ A
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 280 IRALHNSTFNGGVISVE 330
H+S +G I V+
Sbjct: 122 YEDAHHSLIDGREIIVD 138
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
P +FV L ++ EDL +F RFG V D++
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L ++ E LR+ F+++G + E ++
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 285
+ +FV L+K+F FG VT I+ G+V ++E A +A+
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 286 ALHNSTFNGGVISVE 330
A++ F+G I V+
Sbjct: 137 AMNGKFFDGRFILVK 151
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDI--------MNRCGFVHMQTEEQAAAAIRAL 291
+ V ++P +PE+LR+ FERFG V + I FV A A R++
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 292 HNSTFNGGVISV 327
+ +F G I+V
Sbjct: 109 NRRSFAGREITV 120
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 279
P+ + F+G L + LR FE++G + E ++ GF+ ++ A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 280 IRALHNSTFNGGVISVE 330
I A++ +G I+V+
Sbjct: 65 IAAMNGMDLDGRTITVD 81
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 294
++V +L E LR+LF FG +T C +M GFV +A+ + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 295 NSTFNG 312
G
Sbjct: 390 GKMVGG 395
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + LR FE+FG + E ++
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
TKVFVG L + LR FE+FG + E ++
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
+TK++V LP ++ E L FERFG + ++
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVV 41
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG L + +K F +FG++T+ +M
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG L + +K F +FG++T+ +M
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 138
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG L + +K F +FG++T+ +M
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 138
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG LP + + F++FG + + +M
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVM 154
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 288
+++VG+LP +L ++F G V + I+ GFV M + E+A A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 289 LHNSTFNGGVISV 327
++S G + V
Sbjct: 177 FNSSQIGGRTVKV 189
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVV----TECDIMNRCGFVHMQTEEQAAA--AI 282
+P + VG++ + +L+ LFE+FG + T C NR GF+ + + AA A
Sbjct: 214 IPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTAC--KNR-GFIMVSYCDIRAAQNAA 270
Query: 283 RALHNSTFNGGVISV 327
RAL N G + +
Sbjct: 271 RALQNKLLRGTKLDI 285
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 282
+T +++G LP + + L LF FG + ++ GFV + A A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 283 RALHNSTFNGGVISV 327
+A++ F G ++V
Sbjct: 539 QAMNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 282
+T +++G LP + + L LF FG + ++ GFV + A A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 283 RALHNSTFNGGVISV 327
+A++ F G ++V
Sbjct: 539 QAMNGYRFEGRTLAV 553
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
K+FVG +P ++ ++ F +FG + E IM
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-MNRC-------GFVHMQTEEQAAAAIR 285
+K+F+G L + + L + F + G V E I M+R GFV + ++A A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 286 ALHNSTFNGGVISVE 330
+ NG I V+
Sbjct: 94 EFNGQQLNGRTIFVD 108
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 430 HAPPPRDAPYMRDRPGPVRGYERGPPAAP 516
H+PPP Y P P E PP AP
Sbjct: 680 HSPPPSPVHYSSPPPPPSAPCEESPPPAP 708
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVVTEC----DIM--NRCG--FVHMQTEEQAAAAIRA 288
K++V + + + D+R++FE++G VTE D M R F+ + E+ AAI A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 289 L-HNSTFNGGVISVE 330
L TF G ++ V+
Sbjct: 171 LTEQFTFPGEMLPVK 185
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/75 (32%), Positives = 28/75 (37%)
Frame = -3
Query: 703 ARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHSA 524
ARR A R + PP R R P +R P AR H P
Sbjct: 317 ARRRRSPSPPARRRRSPSPPAR------RHRSPTPPARQRR-SPSPPARRHRSPPPARRR 369
Query: 523 RHRAPPADRVRSRAP 479
R +PPA R RS +P
Sbjct: 370 RSPSPPARRRRSPSP 384
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAA 276
+ Q +FV + E+L+ FE +G + EC ++ GFV +T + A
Sbjct: 405 IAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGARE 464
Query: 277 AIRALHNSTFNGGVI 321
A++ +N V+
Sbjct: 465 ALKRPEKRMYNRIVV 479
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 300
V+VG+LP + ++ LF ++G V + D+ FV A AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 301 TFNGGVISVE 330
F+G + VE
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 300
V+VG+LP + ++ LF ++G V + D+ FV A AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 301 TFNGGVISVE 330
F+G + VE
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 300
V+VG+LP + ++ LF ++G V + D+ FV A AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 301 TFNGGVISVE 330
F+G + VE
Sbjct: 69 DFDGHRLRVE 78
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 279
P K+FVG+L L +LFE G V +++ GFV M T + AA
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 280 IRALHNSTFNGGVISV 327
+ + F G + V
Sbjct: 157 AQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +1
Query: 124 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 279
P K+FVG+L L +LFE G V +++ GFV M T + AA
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 280 IRALHNSTFNGGVISV 327
+ + F G + V
Sbjct: 157 AQQFNGYEFEGRPLRV 172
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
V K+FV LP + E L +FE +G + EC ++
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 228
V K+FV LP + E L +FE +G + EC ++
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 133 KVFVGSLPQGSKPEDLRKLFERFGVV 210
+++VG+L +DLRK+FE FG V
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV 311
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR------C-GFVHMQTEEQAAAAIRA 288
++V +LP S P L ++F+ FG + I R C GFV +T +A+ A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEA 352
>At5g22930.1 68418.m02681 hypothetical protein
Length = 248
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 127 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-CG 240
QT + G LPQ P K FE V +C I+N CG
Sbjct: 186 QTLLLAGPLPQWRHPPPPLKSFEIPPVTVQCPIVNNGCG 224
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 300
++VG+LP + ++ LF ++G V + D+ FV + A AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 301 TFNGGVISVE 330
F+G + VE
Sbjct: 69 DFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +1
Query: 136 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 300
++VG+LP + ++ LF ++G V + D+ FV + A AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 301 TFNGGVISVE 330
F+G + VE
Sbjct: 69 DFDGHHLRVE 78
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 121 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 234
V K++VG +P S +++R F GV+ + D R
Sbjct: 158 VVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMR 195
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 130 TKVFVGSLPQGSKPEDLRKLFERFGVVTE 216
T + V +L + EDLRK FE+FG V +
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKD 64
>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
protein (PAKRP1)
Length = 1292
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 583 P*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPD 476
P +PS PR+ SA+ APP DR + PD
Sbjct: 19 PHSPNPSISKSKPPRKLRSAKENAPPLDR-NTSTPD 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,354,792
Number of Sequences: 28952
Number of extensions: 285495
Number of successful extensions: 1156
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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