Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10i23
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             223   5e-59
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.057
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.099
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         28   3.7  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   4.9  
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         27   6.5  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  223 bits (546), Expect = 5e-59
 Identities = 105/155 (67%), Positives = 127/155 (81%), Gaps = 16/155 (10%)
 Frame = +1

Query: 25  MADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REA 156
           MA+QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REA
Sbjct: 1   MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60

Query: 157 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 336
           IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61  IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120

Query: 337 VHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 441
            H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 121 AHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 373 GDIVTIGECRPLSKTVRFNVLKV 441
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +1

Query: 193 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 372
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 373 GDIVTIGECRPLSKTVRFNVLKV 441
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 175 QCRYPQSPLWEF*SLNQHSYGDACP 101
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 43  KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 219
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 220 ILTGVVQK 243
              G  Q+
Sbjct: 276 ARAGNAQR 283


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 220 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 357
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 130 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 20
           N HS  D CP+S C+L    C   +  ++ TL     P C
Sbjct: 33  NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 72


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 130  NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 20
            N HS  D CP+S C+L    C   +  ++ TL     P C
Sbjct: 1330 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 1369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,340
Number of Sequences: 59808
Number of extensions: 306933
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)