Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i23
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 202 1e-52
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 196 5e-51
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 193 6e-50
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.33
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.57
At4g26980.1 68417.m03882 expressed protein 27 5.3
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.3
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos... 27 9.3
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos... 27 9.3
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 9.3
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 202 bits (492), Expect = 1e-52
Identities = 99/144 (68%), Positives = 113/144 (78%), Gaps = 5/144 (3%)
Frame = +1
Query: 25 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 189
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 190 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 369
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VK 119
Query: 370 IGDIVTIGECRPLSKTVRFNVLKV 441
GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 196 bits (479), Expect = 5e-51
Identities = 95/144 (65%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
Frame = +1
Query: 25 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 189
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 190 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 369
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 370 IGDIVTIGECRPLSKTVRFNVLKV 441
GD + IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 193 bits (470), Expect = 6e-50
Identities = 96/144 (66%), Positives = 110/144 (76%), Gaps = 5/144 (3%)
Frame = +1
Query: 25 MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 189
MA+QTEKAF KQ VFL+ K G KR R KN+GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 190 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 369
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VK 119
Query: 370 IGDIVTIGECRPLSKTVRFNVLKV 441
GD V IG+CRPLSKTVRFNVLKV
Sbjct: 120 EGDHVIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 229 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 405
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 406 LSKTVRFNVLKV 441
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 217 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 396
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 397 CRPLSK 414
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.33
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 217 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 396
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 397 CRPLSKTVRFNVLKV 441
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 70 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 198
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 139 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 243
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 214 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 330
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At5g50640.1 68418.m06274 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 27 GGSDRESVSETGHRFPEQERWHEEEG 104
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At5g50530.1 68418.m06258 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 27 GGSDRESVSETGHRFPEQERWHEEEG 104
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 237 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 362
S+ EDA DP +P++ I+ T +EH+ + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,695
Number of Sequences: 28952
Number of extensions: 213277
Number of successful extensions: 504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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