Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10i19
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25) 29 3.5
SB_27931| Best HMM Match : Filament (HMM E-Value=0.028) 29 4.6
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 8.0
SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3) 28 8.0
SB_24800| Best HMM Match : DUF866 (HMM E-Value=4) 28 8.0
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4) 28 8.0
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9) 28 8.0
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 663
GV+EEL KL+ E L ++N+++ + + + NA + L + R L +R+
Sbjct: 799 GVVEELENKLSKLQEKLEQSNQQLAAKSKRIESLNAEMGVLRENLEDERTVVQNLEDRIG 858
Query: 664 DIAQ 675
+ Q
Sbjct: 859 GLIQ 862
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = -3
Query: 473 SILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCL 294
SI+ LP S G+ + S F+ I + ST C R S C
Sbjct: 107 SIINESVNLPRRSMSGLLLLFVEPYTAGDRDSEKFVYPDIKSVRLQSTACQTRSSARDCA 166
Query: 293 TTLSGAGVYGIDPDSLY 243
+SG G+ P+S Y
Sbjct: 167 PRISGGRRKGVSPESFY 183
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 79 IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 240
I +F+FG ++ + ++KF AK+IA + K++ QAV ++ K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +1
Query: 469 MDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQL 648
+DT+ V+EE +K+ + L E+ +++ +L + L + + L E+R+E +
Sbjct: 954 LDTSKRVVEEKEQKVTELDKLLNESVDELQQKDKSLKEKDGKLAELDQALKESRKE---I 1010
Query: 649 ANRMADIAQ 675
NR A ++Q
Sbjct: 1011 KNREAQVSQ 1019
>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
Length = 1486
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/77 (27%), Positives = 28/77 (36%)
Frame = -3
Query: 473 SILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCL 294
SI+ LP S + + A S F+ I V ST C R S C
Sbjct: 969 SIINESVNLPRRSMSSLLLLFVEPYTAGARDSEKFVYPDIKSVRVQSTACQTRSSARGCA 1028
Query: 293 TTLSGAGVYGIDPDSLY 243
+SG G+ P+ Y
Sbjct: 1029 PRISGGRRKGVSPELFY 1045
>SB_27931| Best HMM Match : Filament (HMM E-Value=0.028)
Length = 428
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 463 VKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETA 642
+ DT I+ L KKL+ + L NE+ + +A+ L +A+ NE + +
Sbjct: 124 IPKDTYDREIKALEKKLSRCKQELENNNERRLEAESAVQRLKNSLDKASNFSNETKVKVE 183
Query: 643 QLAN 654
+L N
Sbjct: 184 ELKN 187
>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
+C+G Q+R+G S +KR P G+ G+
Sbjct: 336 ECIGHVQKRVGDSLRKLKRDTPGLGSKGK 364
>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
+C+G Q+R+G S +KR P G+ G+
Sbjct: 347 ECIGHVQKRVGDSLRKLKRDTPGLGSKGK 375
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 91 KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 252
K GED F + +L++G V V D+ +S CK+ ++ Y+ Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 663
G +EEL + L E + NE+I +A A +T + E E L +R+
Sbjct: 673 GRVEELEEMLEAEREKQHKKNEEISSDEDAEQARQALEETMHTTIEELHEEVETLRSRLQ 732
Query: 664 DIAQ 675
D+ Q
Sbjct: 733 DVGQ 736
>SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3)
Length = 257
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
+C+G Q+R+G S +KR P G G+
Sbjct: 146 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174
>SB_24800| Best HMM Match : DUF866 (HMM E-Value=4)
Length = 393
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
+C+G Q+R+G S +KR P G G+
Sbjct: 146 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174
>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
Length = 391
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 304 DPLYLQPHTVLITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNY 483
D + + L+T+ I L ++ + +AV WL ++ +L GKY P+ N+
Sbjct: 115 DAMSIDTAASLLTRSQWISLNIQIVVYFAV----WLTFQLFDAILIPGKYMPSGSYQVNW 170
Query: 484 GVIE 495
+IE
Sbjct: 171 LIIE 174
>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
+C+G Q+R+G S +KR P G G+
Sbjct: 535 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 563
>SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9)
Length = 288
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
+C+G Q+R+G S +KR P G G+
Sbjct: 66 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,322,186
Number of Sequences: 59808
Number of extensions: 419015
Number of successful extensions: 1117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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